| Literature DB >> 30546380 |
Martha-Spyridoula Katsarou1, Aikaterini Karathanasopoulou1, Angeliki Andrianopoulou1, Vasileios Desiniotis1, Efthymios Tzinis2, Efthimios Dimitrakis1, Maria Lagiou1, Evangelia Charmandari3, Michael Aschner4, Aristeidis M Tsatsakis5, George P Chrousos3, Nikolaos Drakoulis1.
Abstract
Genetic polymorphisms in β1-, β2- and β3-adrenergic receptors (β-ARs) have been associated with chronic non-communicable disorders, such as cardiovascular diseases, asthma, chronic obstructive pulmonary disease (COPD) and obesity, as well as β-agonists and antagonists response and toxicity. The purpose of this study was to determine the frequency distribution of ADRB1 genetic variants Ser49Gly and Arg389Gly, ADRB2 variants Gly16Arg and Gln27Glu, ADRB3 variant Trp64Arg in a Southeastern European Caucasian (SEC) population sample and to establish a comparison with existing data from other human populations. A sample of 431 men and 590 women volunteered to participate in this genotyping analysis after anonymization and de-identification. Real Time PCR (Melting Curve Analysis) followed DNA extraction from buccal swabs and statistical analysis of the results was performed. The allele frequencies in the SEC population were Ser49 (90.3%), Arg389 (69.49%), Gly16 (61.61%), Gln27 (65.72%), and Trp64 (94.52%), while a Hardy-Weinberg Equilibrium (HWE) was detected in the population studied. Comparisons for the Ser49Gly, Gln27Glu, and Trp64Arg allele distributions demonstrated significant differences between SEC and the European group. European subgroups comparisons showed that allele distributions were similar for four of the five SNPs between SEC and Southwestern European Caucasians (SWC), while they were quite distinct from the Northwestern European Caucasians (NWC). These data underline the importance of interethnic variability of β-ARs genetic polymorphisms.Entities:
Keywords: Arg389Gly; Gln27Glu; Gly16Arg; Ser49Gly; Trp64Arg; personalized medicine; pharmacogenomics; single nucleotide polymorphisms
Year: 2018 PMID: 30546380 PMCID: PMC6279855 DOI: 10.3389/fgene.2018.00560
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
Genotype frequencies of β1-, β2- and β3-adrenergic receptor polymorphisms in a Southeastern European Caucasian population (SEC).
| Ser49Gly (rs1801252) (HWE = 3.726) | Arg389Gly (rs1801253) (HWE = 0.023) | Gly16Arg (rs1042713) (HWE = 1.931) | Gln27Glu (rs1042714) (HWE = 0.306) | Trp64Arg | |
|---|---|---|---|---|---|
| Ser:Ser | Arg:Arg | Gly:Gly | Gln:Gln | Trp:Trp | |
| Ser:Gly | Arg:Gly | Gly:Arg | Gln:Glu | Trp:Arg | |
| Gly:Gly | Gly:Gly | Arg:Arg | Glu:Glu | Arg:Arg | |
Allele frequency distributions of β1-, β2-, β3-adrenergic receptor polymorphisms between the Southeastern European Caucasian population (SEC) and other populations.
| Ser49Gly (rs1801252) ( | Subjects | Ser % | Gly % | OR | 95% CI | ||
|---|---|---|---|---|---|---|---|
| SEC | ( | 90.30 | 9.70 | – | – | – | |
| European | ( | 87.28 | 12.72 | 1.36 | 1.07–1.72 | 0.0126 | |
| NWC1 | ( | 85.81 | 14.19 | 1.54 | 1.17–2.03 | 0.002 | |
| SWC2 | ( | 89.25 | 10.75 | 1.12 | 0.80–1.57 | n.s. | |
| African | ( | 76.10 | 24.90 | 2.93 | 2.41–3.55 | <0.0001 | |
| American | ( | 74.93 | 25.07 | 3.12 | 2.49–3.91 | <0.0001 | |
| Asian (East) | ( | 85.91 | 14.09 | 1.53 | 1.21–1.92 | 0.0004 | |
| Asian (South) | ( | 86.71 | 13.29 | 1.43 | 1.13–1.81 | 0.0033 | |
| Global | ( | 82.23 | 17.77 | 2.01 | 1.71–2.37 | <0.0001 | |
| SEC | ( | 69.49 | 30.51 | – | – | – | |
| European | ( | 68.49 | 31.51 | 1.05 | 0.89–1.23 | n.s. | |
| NWC1 | ( | 67.82 | 32.18 | 1.08 | 0.89–1.32 | n.s. | |
| SWC2 | ( | 69.39 | 30.61 | 1.00 | 0.80–1.08 | n.s. | |
| African | ( | 57.03 | 42.97 | 1.72 | 1.49–1.98 | <0.0001 | |
| American | ( | 80.55 | 19.45 | 0.55 | 0.45–0.68 | <0.0001 | |
| Asian (East) | ( | 78.77 | 21.23 | 0.61 | 0.51–0.73 | <0.0001 | |
| Asian (South) | ( | 73.42 | 26.58 | 0.82 | 0.70–0.98 | 0.0292 | |
| Global | ( | 70.17 | 29.83 | 0.97 | 0.87–1.08 | n.s. | |
| SEC | ( | 61.61 | 38.39 | – | – | – | |
| European | ( | 61.43 | 38.57 | 1.01 | 0.86–1.18 | n.s. | |
| NWC1 | ( | 60.73 | 39.27 | 1.04 | 0.86–1.25 | n.s. | |
| SWC2 | ( | 62.38 | 37.62 | 0.97 | 0.8–1.20 | n.s. | |
| African | ( | 47.96 | 52.04 | 1.74 | 1.51–2.00 | <0.0001 | |
| American | ( | 54.32 | 45.68 | 1.35 | 1.13–1.61 | 0.0008 | |
| Asian (East) | ( | 45.14 | 54.86 | 1.95 | 1.67–2.27 | <0.0001 | |
| Asian (South) | ( | 55.42 | 44.58 | 1.29 | 1.10–1.51 | 0.0013 | |
| Global | ( | 52.44 | 47.56 | 1.46 | 1.31–1.62 | <0.0001 | |
| SEC | ( | 65.72 | 34.28 | – | – | – | |
| European | ( | 59.05 | 40.95 | 1.33 | 1.14–1.55 | 0.0004 | |
| NWC1 | ( | 59.00 | 41.00 | 1.33 | 1.10–1.61 | 0.0032 | |
| SWC2 | ( | 59.11 | 40.89 | 1.33 | 1.07–1.64 | 0.0105 | |
| African | ( | 86.38 | 13.62 | 0.30 | 0.25–0.36 | <0.0001 | |
| American | ( | 75.79 | 24.21 | 0.61 | 0.50–0.75 | <0.0001 | |
| Asian (East) | ( | 92.66 | 7.34 | 0.15 | 0.12–0.20 | <0.0001 | |
| Asian (South) | ( | 80.67 | 19.33 | 0.46 | 0.38–0.55 | <0.0001 | |
| Global | ( | 79.57 | 20.43 | 0.49 | 0.44–0.55 | <0.0001 | |
| SEC | ( | 94.52 | 5.48 | – | – | – | |
| European | ( | 91.85 | 8.15 | 1.53 | 1.12–2.05 | 0.0057 | |
| NWC1 | ( | 89.79 | 10.21 | 1.96 | 1.41–2.72 | <0.0001 | |
| SWC2 | ( | 94.63 | 5.37 | 0.98 | 0.62–1.55 | n.s. | |
| African | ( | 90.54 | 9.46 | 1.80 | 1.38–2.35 | <0.0001 | |
| American | ( | 88.04 | 11.96 | 2.34 | 1.74–3.15 | <0.0001 | |
| Asian (East) | ( | 86.90 | 13.10 | 2.60 | 1.99–3.38 | <0.0001 | |
| Asian (South) | ( | 84.25 | 15.75 | 3.22 | 2.49–4.16 | <0.0001 | |
| Global | ( | 88.50 | 11.50 | 2.24 | 1.82–2.76 | <0.0001 | |
FIGURE 1Distance graph based on p-value for β-adrenergic receptors polymorphisms Ser49Gly (rs1801252), Arg389Gly (rs1801253), Gly16Arg (rs1042713), Gln27Glu (rs1042714), and Trp64Arg (rs4994). All comparisons are made between SEC and other populations. Data for the other populations derived from the Ensembl Genome Browser http://www.ensembl.org/index.html. AFR, Africans; AM, Americans; EAS, East Asians; EUR, Europeans; NWC, Northwestern Caucasians; SAS, South Asians; SEC, Southeastern Caucasians; SWC, Southwestern Caucasians.