| Literature DB >> 27221532 |
Martha-Spyridoula Katsarou1, Rosana Latsi1, Maria Papasavva1, Nikolaos Demertzis1, Thodoris Kalogridis1, Aristides M Tsatsakis2, Demetrios A Spandidos3, Nikolaos Drakoulis1.
Abstract
Hereditary hemochromatosis (HH) is an autosomal recessive genetic disease, characterized by increased dietary iron absorption. Due to the absence of an effective excretory mechanism, the excess iron in the body may accumulate resulting in toxic effects. The HFE gene also affects the activity of hepcidin, a hormone which acts as a negative regulator of iron metabolism. In this study, we performed a population-based analysis of the distribution of three hemochromatosis-related polymorphisms in the HFE gene (rs1800562, rs1799945 and rs1800730). DNA from 1,446 non‑related individuals of Greek ethnicity was collected and analyzed, either from whole blood or buccal swabs. The frequency distribution of these HFE gene polymorphisms was then determined. The results revealed that in our Greek population cohort (gr) the frequencies of each polymorphism were as follows: rs1800562: GG (wild‑type)=97.0%, GA=1.5%, AA=1.5%; rs1799945: CC (wild‑type)=74.4%, CG=23.4%, GG=2.2%; rs1800730: AA (wild‑type)=98.1%, AT=1.5% and TT=0.4%. No association between the HFE polymorphisms rs1800562, rs1799945 and rs1800730 and gender could be established. As regards the rs1800562 polymorphism, the A allele (mutant) was ~1.8‑fold more frequent in the European population (eur) than in the Greek population [(gr)=2,3%<(eur)=4%]. As for the rs1799945 polymorphism, the G allele (mutant) was 1.2‑fold more frequent in the European population than in the Greek population [(gr)=13,9%<(eur)=17%]. As regards the rs1800730 polymorphism, the T allele (mutant) was ~1.7‑fold more frequent in the European population than in the Greek population [(gr)=1.2%<(eur)=2%]. However, these pathogenic mutations were found more frequently in the Greek population compared to the global population (gl) [rs1800562: (gl)=1%<(gr)=2,3%; rs1799945: (gl)=7%<(gr)=13,9%; rs1800730: (gl)=<1%<(gr)=1.2%]. This suggests that the Greek population may differ genetically from the northern European population, due to influences from neighboring Asian and African populations. These findings also suggest that there is no gender-associated inheritance of these polymorphisms, and gender-specific symptoms appear as a result of independent biological processes. Thus, the early detection of the tendency towards iron accumulation may be achieved by the genotypic analysis of the polymorphisms that may contribute to the development of the hemochromatosis.Entities:
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Year: 2016 PMID: 27221532 PMCID: PMC4918619 DOI: 10.3892/mmr.2016.5317
Source DB: PubMed Journal: Mol Med Rep ISSN: 1791-2997 Impact factor: 2.952
Figure 1Age distribution of the 1,446 Caucasian volunteers.
Genotype and allele distribution of the rs1800562 in polymorphism in 1,446 volunteers.
| rs1800562 | No. (%) |
|---|---|
| Genotype frequency | |
| G:G | 1,403 (97.0) |
| G:A | 22 (1.5) |
| A:A | 21 (1.5) |
| Total | 1,446 (100.0) |
| Allele frequency | |
| G | 2,828 (97.7) |
| A | 64 (2.3) |
| Total | 2,892 (100.0) |
Figure 2Genotype distribution of the rs1800562 polymorphism.
Genotype and allele distribution of the rs1799945 polymorphism in 1,429 volunteers.
| rs1799945 | No. (%) |
|---|---|
| Genotype frequency | |
| C:C | 1,064 (74.4) |
| C:G | 334 (23.4) |
| G:G | 31 (2.2) |
| Total | 1,429 (100.0) |
| Allele frequency | |
| C | 2,462 (86.1) |
| G | 396 (13.9) |
| Total | 2,858 (100.0) |
Figure 3Genotype distribution of the rs1799945 polymorphism.
Genotype and allele distribution of the rs1800730 polymorphism in 1,219 volunteers.
| rs1800730 | No. (%) |
|---|---|
| Genotype frequency | |
| A:A | 1,196 (98.1) |
| A:T | 18 (1.5) |
| T:T | 5 (0.4) |
| Total | 1,429 (100.0) |
| Allele frequency | |
| A | 2,410 (98.8) |
| T | 28 (1.2) |
| Total | 2,438 (100.0) |
Figure 4Genotype distribution of the rs1800730 polymorphism.
Correlation between genders regarding the frequency distribution of the HFE gene polymorphisms, rs1800562, rs1800562 and rs1800562.
| Gene polymorphism | Allele | Total | Men | Women | Odds ratio | Confidence interval |
|---|---|---|---|---|---|---|
| rs1800562 | A | 53 | 26 | 27 | 1.12 | 0.65–1.3 |
| G | 2,817 | 1,302 | 1,515 | |||
| rs1800562 | G | 229 | 95 | 135 | 0.77 | 0.59–1.02 |
| C | 2,295 | 1,093 | 1,203 | |||
| rs1800562 | T | 20 | 11 | 9 | 0.74 | 0.31–1.79 |
| A | 2,402 | 1,141 | 1,261 |
Figure 5Simultaneous occurrence of the polymorphisms.
Comparative frequency and allelic distribution rates of the rs1800562 polymorphism in the Greek, European and global populations.
| Population | Allele
| |
|---|---|---|
| A | G | |
| Global | 1% | 99% |
| European | 4% | 96% |
| Greek | 2% | 98% |
The data for the global and European populations were obtained from a previous study (http://browser.1000genomes.org/Homo_sapiens/Variation/Population?db=core;r=6:26092641-26093641;v=rs1800562;vdb=variation;vf=1229831).
Comparative frequency and genotype distribution rates of the rs1800562 polymorphism in the Greek, European and global population.
| Population | % Genotype
| ||
|---|---|---|---|
| G:G | G:A | A:A | |
| Global | 97.6 | 2.4 | 0.1 |
| European | 91.7 | 8.2 | 0.2 |
| Greek | 97.0 | 2.0 | 1.0 |
The data for the global and European populations were obtained from a previously published data (http://browser.1000genomes.org/Homo_sapiens/Variation/Population?db=core;r=6:26092641-26093641;v=rs1800562;vdb=variation;vf=1229831).
Comparative frequency and allelic distribution rates of the rs1799945 polymorphism in the Greek, European and global populations.
| Population | Allele
| |
|---|---|---|
| G | C | |
| Global | 7% | 93% |
| European | 17% | 83% |
| Greek | 9% | 91% |
The data for the global and European populations were obtained from a previously published data (http://browser.1000genomes.org/Homo_sapiens/Variation/Population?v=rs1799945;%20vdb=variation).
Comparative frequency and genotype distribution rates of the rs1799945 polymorphism in the Greek, European and global populations.
| Population | % Genotype
| ||
|---|---|---|---|
| C:C | C:G | G:G | |
| Global | 86.6 | 12.2 | 1.2 |
| European | 69.2 | 27.2 | 3.6 |
| Greek | 74.4 | 23.4 | 2.2 |
The data for the global and European populations were obtained from a previously published data (http://browser.1000genomes.org/Homo_sapiens/Variation/Population?v=rs1799945;%20vdb=variation).
Comparative frequency and allelic distribution rates of the rs1800730 polymorphism in the Greek, European and global populations.
| Population | Allele
| |
|---|---|---|
| T | A | |
| Global | <1% | 100.0% |
| European | 2.0% | 98.0% |
| Greek | 0.8% | 99.2% |
The data for the global and European populations were obtained from a previously published data (http://browser.1000genomes.org/Homo_sapiens/Variation/Population?r=6:26090685-26091685;v=rs1800730;vdb=variation;vf=1229981).
Comparative frequency and genotype distribution rates of the rs1800730 polymorphism in the Greek, European and global populations.
| Population | % Genotype
| ||
|---|---|---|---|
| A:A | A:T | T:T | |
| Global | 99.2 | 0.7 | <1% |
| European | 97.0 | 2.8 | 0.2 |
| Greek | 98.1 | 10.5 | 0.4 |
The data for the global and European populations were obtained from a previously published data (http://browser.1000genomes.org/Homo_sapiens/Variation/Population?r=6:26090685-26091685;v=rs1800730;vdb=variation;vf=1229981).