Literature DB >> 30543290

Effects of a Hydrophilic/Hydrophobic Interface on Amyloid-β Peptides Studied by Molecular Dynamics Simulations and NMR Experiments.

Satoru G Itoh1,2,3, Maho Yagi-Utsumi1,2,4,5, Koichi Kato1,2,4,5, Hisashi Okumura1,2,3.   

Abstract

Oligomer formation of amyloid-β peptides (Aβ) is accelerated at a hydrophilic/hydrophobic interface. However, details of the acceleration mechanism have not been elucidated. To understand the effects of the interface on oligomerization at the atomic level, we performed molecular dynamics simulations for an Aβ40 monomer in the presence and absence of the hydrophilic/hydrophobic interface. Nuclear magnetic resonance experiments of Aβ40 peptides with gangliosidic micelles were also carried out. In the simulations and experiments, the hydrophobic residues of Aβ40 bound to the interface stably. Moreover, we found that Aβ40 formed a hairpin structure at the interface more readily than in bulk water. From these results, we discussed the acceleration mechanism of the oligomer formation at the interface.

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Year:  2019        PMID: 30543290     DOI: 10.1021/acs.jpcb.8b11609

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

Review 1.  Biophysical research in Okazaki, Japan.

Authors:  Shuji Akiyama; Kazuhiro Aoki; Yoshihiro Kubo
Journal:  Biophys Rev       Date:  2020-02-15

Review 2.  All-Atom Molecular Dynamics Simulation Methods for the Aggregation of Protein and Peptides: Replica Exchange/Permutation and Nonequilibrium Simulations.

Authors:  Satoru G Itoh; Hisashi Okumura
Journal:  Methods Mol Biol       Date:  2022

Review 3.  Experimental and computational characterization of dynamic biomolecular interaction systems involving glycolipid glycans.

Authors:  Koichi Kato; Takumi Yamaguchi; Maho Yagi-Utsumi
Journal:  Glycoconj J       Date:  2022-03-17       Impact factor: 2.916

4.  Molecular dynamics simulations of amyloid-β peptides in heterogeneous environments.

Authors:  Yuhei Tachi; Satoru G Itoh; Hisashi Okumura
Journal:  Biophys Physicobiol       Date:  2022-04-02

Review 5.  Molecular Dynamics Simulation Studies on the Aggregation of Amyloid-β Peptides and Their Disaggregation by Ultrasonic Wave and Infrared Laser Irradiation.

Authors:  Hisashi Okumura; Satoru G Itoh
Journal:  Molecules       Date:  2022-04-12       Impact factor: 4.927

6.  Conformational Change of Amyloid-β 40 in Association with Binding to GM1-Glycan Cluster.

Authors:  Yuhei Tachi; Yuko Okamoto; Hisashi Okumura
Journal:  Sci Rep       Date:  2019-05-02       Impact factor: 4.379

Review 7.  Promotion and Inhibition of Amyloid-β Peptide Aggregation: Molecular Dynamics Studies.

Authors:  Satoru G Itoh; Hisashi Okumura
Journal:  Int J Mol Sci       Date:  2021-02-13       Impact factor: 5.923

Review 8.  Conformational Variability of Amyloid-β and the Morphological Diversity of Its Aggregates.

Authors:  Maho Yagi-Utsumi; Koichi Kato
Journal:  Molecules       Date:  2022-07-26       Impact factor: 4.927

9.  Cold Atmospheric Plasma Modification of Amyloid β.

Authors:  Maho Yagi-Utsumi; Tomohiro Tanaka; Yoko Otsubo; Akira Yamashita; Shinji Yoshimura; Motohiro Nishida; Koichi Kato
Journal:  Int J Mol Sci       Date:  2021-03-18       Impact factor: 5.923

  9 in total

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