Literature DB >> 30532082

A pH-correctable, DNA-based fluorescent reporter for organellar calcium.

Nagarjun Narayanaswamy1,2, Kasturi Chakraborty3,4, Anand Saminathan1,2, Elizabeth Zeichner1, KaHo Leung1,2, John Devany5, Yamuna Krishnan6,7.   

Abstract

It is extremely challenging to quantitate lumenal Ca2+ in acidic Ca2+ stores of the cell because all Ca2+ indicators are pH sensitive, and Ca2+ transport is coupled to pH in acidic organelles. We have developed a fluorescent DNA-based reporter, CalipHluor, that is targetable to specific organelles. By ratiometrically reporting lumenal pH and Ca2+ simultaneously, CalipHluor functions as a pH-correctable Ca2+ reporter. By targeting CalipHluor to the endolysosomal pathway, we mapped lumenal Ca2+ changes during endosomal maturation and found a surge in lumenal Ca2+ specifically in lysosomes. Using lysosomal proteomics and genetic analysis, we found that catp-6, a Caenorhabditis elegans homolog of ATP13A2, was responsible for lysosomal Ca2+ accumulation-an example of a lysosome-specific Ca2+ importer in animals. By enabling the facile quantification of compartmentalized Ca2+, CalipHluor can expand the understanding of subcellular Ca2+ importers.

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Year:  2018        PMID: 30532082      PMCID: PMC7107693          DOI: 10.1038/s41592-018-0232-7

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  6 in total

1.  Regulation of endocytosis by CUP-5, the Caenorhabditis elegans mucolipin-1 homolog.

Authors:  H Fares; I Greenwald
Journal:  Nat Genet       Date:  2001-05       Impact factor: 38.330

2.  A new generation of Ca2+ indicators with greatly improved fluorescence properties.

Authors:  G Grynkiewicz; M Poenie; R Y Tsien
Journal:  J Biol Chem       Date:  1985-03-25       Impact factor: 5.157

3.  Genetic analysis of endocytosis in Caenorhabditis elegans: coelomocyte uptake defective mutants.

Authors:  H Fares; I Greenwald
Journal:  Genetics       Date:  2001-09       Impact factor: 4.562

4.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

5.  pH-dependent regulation of lysosomal calcium in macrophages.

Authors:  Kenneth A Christensen; Jesse T Myers; Joel A Swanson
Journal:  J Cell Sci       Date:  2002-02-01       Impact factor: 5.285

Review 6.  Cellular function and pathological role of ATP13A2 and related P-type transport ATPases in Parkinson's disease and other neurological disorders.

Authors:  Sarah van Veen; Danny M Sørensen; Tine Holemans; Henrik W Holen; Michael G Palmgren; Peter Vangheluwe
Journal:  Front Mol Neurosci       Date:  2014-05-27       Impact factor: 5.639

  6 in total
  29 in total

Review 1.  Dynamic DNA Structures.

Authors:  Yingwei Zhang; Victor Pan; Xue Li; Xueqin Yang; Haofei Li; Pengfei Wang; Yonggang Ke
Journal:  Small       Date:  2019-04-10       Impact factor: 13.281

Review 2.  Preserving Lysosomal Function in the Aging Brain: Insights from Neurodegeneration.

Authors:  Wesley Peng; Georgia Minakaki; Maria Nguyen; Dimitri Krainc
Journal:  Neurotherapeutics       Date:  2019-07       Impact factor: 7.620

3.  Dysregulated iron metabolism in C. elegans catp-6/ATP13A2 mutant impairs mitochondrial function.

Authors:  Nikhita Anand; Angelina Holcom; Michael Broussalian; Minna Schmidt; Shankar J Chinta; Gordon J Lithgow; Julie K Andersen; Manish Chamoli
Journal:  Neurobiol Dis       Date:  2020-02-05       Impact factor: 5.996

4.  ATP13A2 deficiency disrupts lysosomal polyamine export.

Authors:  Sarah van Veen; Shaun Martin; Chris Van den Haute; Veronick Benoy; Joseph Lyons; Roeland Vanhoutte; Jan Pascal Kahler; Jean-Paul Decuypere; Géraldine Gelders; Eric Lambie; Jeffrey Zielich; Johannes V Swinnen; Wim Annaert; Patrizia Agostinis; Bart Ghesquière; Steven Verhelst; Veerle Baekelandt; Jan Eggermont; Peter Vangheluwe
Journal:  Nature       Date:  2020-01-29       Impact factor: 49.962

5.  A DNA Aptamer for Cyclic Adenosine Monophosphate that Shows Adaptive Recognition.

Authors:  Suruchi Sharma; Matthew Zajac; Yamuna Krishnan
Journal:  Chembiochem       Date:  2019-08-29       Impact factor: 3.164

Review 6.  An atlas of nano-enabled neural interfaces.

Authors:  Héctor Acarón Ledesma; Xiaojian Li; João L Carvalho-de-Souza; Wei Wei; Francisco Bezanilla; Bozhi Tian
Journal:  Nat Nanotechnol       Date:  2019-07-03       Impact factor: 39.213

Review 7.  Nucleic-Acid Structures as Intracellular Probes for Live Cells.

Authors:  Devleena Samanta; Sasha B Ebrahimi; Chad A Mirkin
Journal:  Adv Mater       Date:  2019-07-04       Impact factor: 30.849

Review 8.  The ins and outs of virus trafficking through acidic Ca2+ stores.

Authors:  Gihan S Gunaratne; Jonathan S Marchant
Journal:  Cell Calcium       Date:  2022-01-06       Impact factor: 6.817

9.  A DNA-based fluorescent probe maps NOS3 activity with subcellular spatial resolution.

Authors:  Junyi Zou; Aneesh T Veetil; Maulik S Jani; Yamuna Krishnan
Journal:  Nat Chem Biol       Date:  2020-03-09       Impact factor: 15.040

Review 10.  Genetically encoded RNA nanodevices for cellular imaging and regulation.

Authors:  Qikun Yu; Kewei Ren; Mingxu You
Journal:  Nanoscale       Date:  2021-05-06       Impact factor: 7.790

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