Literature DB >> 30530632

Peroxisome biogenesis, membrane contact sites, and quality control.

Jean-Claude Farré1, Shanmuga S Mahalingam1, Marco Proietto1, Suresh Subramani2.   

Abstract

Peroxisomes are conserved organelles of eukaryotic cells with important roles in cellular metabolism, human health, redox homeostasis, as well as intracellular metabolite transfer and signaling. We review here the current status of the different co-existing modes of biogenesis of peroxisomal membrane proteins demonstrating the fascinating adaptability in their targeting and sorting pathways. While earlier studies focused on peroxisomes as autonomous organelles, the necessity of the ER and potentially even mitochondria as sources of peroxisomal membrane proteins and lipids has come to light in recent years. Additionally, the intimate physical juxtaposition of peroxisomes with other organelles has transitioned from being viewed as random encounters to a growing appreciation of the expanding roles of such inter-organellar membrane contact sites in metabolic and regulatory functions. Peroxisomal quality control mechanisms have also come of age with a variety of mechanisms operating both during biogenesis and in the cellular response to environmental cues.
© 2018 The Authors.

Entities:  

Keywords:  de novo peroxisome biogenesis; peroxisomal membrane contact sites; peroxisomal membrane protein biogenesis; peroxisome growth and division; peroxisome quality control

Mesh:

Substances:

Year:  2018        PMID: 30530632      PMCID: PMC6322382          DOI: 10.15252/embr.201846864

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  189 in total

1.  Peroxisome remnants in pex3delta cells and the requirement of Pex3p for interactions between the peroxisomal docking and translocation subcomplexes.

Authors:  Partha P Hazra; Ivet Suriapranata; William B Snyder; Suresh Subramani
Journal:  Traffic       Date:  2002-08       Impact factor: 6.215

2.  Assembly of Peroxisomal Membrane Proteins via the Direct Pex19p-Pex3p Pathway.

Authors:  Yuqiong Liu; Yuichi Yagita; Yukio Fujiki
Journal:  Traffic       Date:  2016-02-23       Impact factor: 6.215

3.  Peroxisomal monoubiquitinated PEX5 interacts with the AAA ATPases PEX1 and PEX6 and is unfolded during its dislocation into the cytosol.

Authors:  Ana G Pedrosa; Tânia Francisco; Diana Bicho; Ana F Dias; Aurora Barros-Barbosa; Vera Hagmann; Gabriele Dodt; Tony A Rodrigues; Jorge E Azevedo
Journal:  J Biol Chem       Date:  2018-06-08       Impact factor: 5.157

4.  Mitofusin 2 tethers endoplasmic reticulum to mitochondria.

Authors:  Olga Martins de Brito; Luca Scorrano
Journal:  Nature       Date:  2008-12-04       Impact factor: 49.962

Review 5.  Mechanistic insights into selective autophagy pathways: lessons from yeast.

Authors:  Jean-Claude Farré; Suresh Subramani
Journal:  Nat Rev Mol Cell Biol       Date:  2016-07-06       Impact factor: 94.444

6.  Inhibitors of COPI and COPII do not block PEX3-mediated peroxisome synthesis.

Authors:  S T South; K A Sacksteder; X Li; Y Liu; S J Gould
Journal:  J Cell Biol       Date:  2000-06-26       Impact factor: 10.539

7.  Multiple dynamin family members collaborate to drive mitochondrial division.

Authors:  Jason E Lee; Laura M Westrate; Haoxi Wu; Cynthia Page; Gia K Voeltz
Journal:  Nature       Date:  2016-10-31       Impact factor: 49.962

8.  The membrane of peroxisomes in Saccharomyces cerevisiae is impermeable to NAD(H) and acetyl-CoA under in vivo conditions.

Authors:  C W van Roermund; Y Elgersma; N Singh; R J Wanders; H F Tabak
Journal:  EMBO J       Date:  1995-07-17       Impact factor: 11.598

9.  Yeast peroxisomes multiply by growth and division.

Authors:  Alison M Motley; Ewald H Hettema
Journal:  J Cell Biol       Date:  2007-07-23       Impact factor: 10.539

10.  ATM functions at the peroxisome to induce pexophagy in response to ROS.

Authors:  Jiangwei Zhang; Durga Nand Tripathi; Ji Jing; Angela Alexander; Jinhee Kim; Reid T Powell; Ruhee Dere; Jacqueline Tait-Mulder; Ji-Hoon Lee; Tanya T Paull; Raj K Pandita; Vijaya K Charaka; Tej K Pandita; Michael B Kastan; Cheryl Lyn Walker
Journal:  Nat Cell Biol       Date:  2015-09-07       Impact factor: 28.824

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  40 in total

1.  Transforming yeast peroxisomes into microfactories for the efficient production of high-value isoprenoids.

Authors:  Simon Dusséaux; William Thomas Wajn; Yixuan Liu; Codruta Ignea; Sotirios C Kampranis
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-02       Impact factor: 11.205

Review 2.  Balancing the Opposing Principles That Govern Peroxisome Homeostasis.

Authors:  Shanmuga S Mahalingam; Nandini Shukla; Jean-Claude Farré; Katarzyna Zientara-Rytter; Suresh Subramani
Journal:  Trends Biochem Sci       Date:  2020-10-09       Impact factor: 13.807

Review 3.  A cell cycle checkpoint for the endoplasmic reticulum.

Authors:  Maho Niwa
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2020-08-21       Impact factor: 4.739

4.  Peroxisome injury in multiple sclerosis: protective effects of 4-phenylbutyrate in CNS-associated macrophages.

Authors:  Andrej Roczkowsky; Matthew A L Doan; Brittyne Hlavay; Manmeet K Mamik; William G Branton; Brienne A McKenzie; Leina B Saito; Laura Schmitt; Gary Eitzen; Francesca Di Cara; Melinda Wuest; Frank Wuest; Richard Rachubinski; Christopher Power
Journal:  J Neurosci       Date:  2022-08-08       Impact factor: 6.709

5.  PEX5 translocation into and out of peroxisomes drives matrix protein import.

Authors:  Michael L Skowyra; Tom A Rapoport
Journal:  Mol Cell       Date:  2022-08-04       Impact factor: 19.328

6.  Identification and Characterization of a Novel Species of Genus Akkermansia with Metabolic Health Effects in a Diet-Induced Obesity Mouse Model.

Authors:  Ritesh Kumar; Helene Kane; Qiong Wang; Ashley Hibberd; Henrik Max Jensen; Hye-Sook Kim; Steffen Yde Bak; Isabelle Auzanneau; Stéphanie Bry; Niels Christensen; Andrew Friedman; Pia Rasinkangas; Arthur C Ouwehand; Sofia D Forssten; Oliver Hasselwander
Journal:  Cells       Date:  2022-06-30       Impact factor: 7.666

7.  A peroxisomal ubiquitin ligase complex forms a retrotranslocation channel.

Authors:  Peiqiang Feng; Xudong Wu; Satchal K Erramilli; Joao A Paulo; Pawel Knejski; Steven P Gygi; Anthony A Kossiakoff; Tom A Rapoport
Journal:  Nature       Date:  2022-06-29       Impact factor: 69.504

8.  Bacterial Infection Induces Ultrastructural and Transcriptional Changes in the King Oyster Mushroom (Pleurotus eryngii).

Authors:  Qi Gao; Yu Liu; Jianbo Xie; Shuang Zhao; Wentao Qin; Qinggang Song; Shouxian Wang; Chengbo Rong
Journal:  Microbiol Spectr       Date:  2022-05-26

9.  Pex3 confines pexophagy receptor activity of Atg36 to peroxisomes by regulating Hrr25-mediated phosphorylation and proteasomal degradation.

Authors:  Sota Meguro; Xizhen Zhuang; Hiromi Kirisako; Hitoshi Nakatogawa
Journal:  J Biol Chem       Date:  2020-09-21       Impact factor: 5.157

10.  In-Pero: Exploiting Deep Learning Embeddings of Protein Sequences to Predict the Localisation of Peroxisomal Proteins.

Authors:  Marco Anteghini; Vitor Martins Dos Santos; Edoardo Saccenti
Journal:  Int J Mol Sci       Date:  2021-06-15       Impact factor: 5.923

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