Literature DB >> 30525552

18O Kinetic Isotope Effects Reveal an Associative Transition State for Phosphite Dehydrogenase Catalyzed Phosphoryl Transfer.

Graeme W Howe1,2, Wilfred A van der Donk1,2,3.   

Abstract

Phosphite dehydrogenase (PTDH) catalyzes an unusual phosphoryl transfer reaction in which water displaces a hydride leaving group. Despite extensive effort, it remains unclear whether PTDH catalysis proceeds via an associative or dissociative mechanism. Here, primary 2H and secondary 18O kinetic isotope effects (KIEs) were determined and used together with computation to characterize the transition state (TS) catalyzed by a thermostable PTDH (17X-PTDH). The large, normal 18O KIEs suggest an associative mechanism. Various transition state structures were computed within a model of the enzyme active site and 2H and 18O KIEs were predicted to evaluate the accuracy of each TS. This analysis suggests that 17X-PTDH catalyzes an associative process with little leaving group displacement and extensive nucleophilic participation. This tight TS is likely a consequence of the extremely poor leaving group requiring significant P-O bond formation to expel the hydride. This finding contrasts with the dissociative TSs in most phosphoryl transfer reactions from phosphate mono- and diesters.

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Year:  2018        PMID: 30525552      PMCID: PMC6467793          DOI: 10.1021/jacs.8b06301

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  32 in total

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3.  Transition-state structures for enzymatic and alkaline phosphotriester hydrolysis.

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4.  Optimizing a biocatalyst for improved NAD(P)H regeneration: directed evolution of phosphite dehydrogenase.

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Journal:  ACS Synth Biol       Date:  2018-09-11       Impact factor: 5.110

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7.  Mechanistic study of protein phosphatase-1 (PP1), a catalytically promiscuous enzyme.

Authors:  Claire McWhirter; Elizabeth A Lund; Eric A Tanifum; Guoqiang Feng; Qaiser I Sheikh; Alvan C Hengge; Nicholas H Williams
Journal:  J Am Chem Soc       Date:  2008-09-18       Impact factor: 15.419

8.  Crystal structures of phosphite dehydrogenase provide insights into nicotinamide cofactor regeneration.

Authors:  Yaozhong Zou; Houjin Zhang; Joseph S Brunzelle; Tyler W Johannes; Ryan Woodyer; John E Hung; Nikhil Nair; Wilfred A van der Donk; Huimin Zhao; Satish K Nair
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9.  A Novel Biocontainment Strategy Makes Bacterial Growth and Survival Dependent on Phosphite.

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Journal:  Sci Rep       Date:  2017-03-20       Impact factor: 4.379

10.  Investigation of the role of Arg301 identified in the X-ray structure of phosphite dehydrogenase.

Authors:  John E Hung; Emily J Fogle; Harry D Christman; Tyler W Johannes; Huimin Zhao; William W Metcalf; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2012-05-17       Impact factor: 3.162

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  2 in total

1.  Examining the Mechanism of Phosphite Dehydrogenase with Quantum Mechanical/Molecular Mechanical Free Energy Simulations.

Authors:  David R Stevens; Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2020-02-14       Impact factor: 3.162

2.  Temperature-Independent Kinetic Isotope Effects as Evidence for a Marcus-like Model of Hydride Tunneling in Phosphite Dehydrogenase.

Authors:  Graeme W Howe; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2019-10-07       Impact factor: 3.162

  2 in total

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