Literature DB >> 30525135

Towards rapid prediction of drug-resistant cancer cell phenotypes: single cell mass spectrometry combined with machine learning.

Renmeng Liu1, Genwei Zhang, Zhibo Yang.   

Abstract

Combined single cell mass spectrometry and machine learning methods is demonstrated for the first time to achieve rapid and reliable prediction of the phenotype of unknown single cells based on their metabolomic profiles, with experimental validation. This approach can be potentially applied towards prediction of drug-resistant phenotypes prior to chemotherapy.

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Year:  2019        PMID: 30525135      PMCID: PMC6640148          DOI: 10.1039/c8cc08296k

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  36 in total

1.  Cell adhesion mediated drug resistance (CAM-DR): role of integrins and resistance to apoptosis in human myeloma cell lines.

Authors:  J S Damiano; A E Cress; L A Hazlehurst; A A Shtil; W S Dalton
Journal:  Blood       Date:  1999-03-01       Impact factor: 22.113

Review 2.  Cell adhesion is a key determinant in de novo multidrug resistance (MDR): new targets for the prevention of acquired MDR.

Authors:  K H Shain; W S Dalton
Journal:  Mol Cancer Ther       Date:  2001-11       Impact factor: 6.261

Review 3.  Mass spectrometry in systems biology: an overview.

Authors:  Xiaojun Feng; Xin Liu; Qingming Luo; Bi-Feng Liu
Journal:  Mass Spectrom Rev       Date:  2008 Nov-Dec       Impact factor: 10.946

4.  A century of progress in molecular mass spectrometry.

Authors:  Fred W McLafferty
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2011       Impact factor: 10.745

Review 5.  Live single-cell mass spectrometry.

Authors:  Tsutomu Masujima
Journal:  Anal Sci       Date:  2009-08       Impact factor: 2.081

6.  Cell adhesion-mediated drug resistance (CAM-DR) protects the K562 chronic myelogenous leukemia cell line from apoptosis induced by BCR/ABL inhibition, cytotoxic drugs, and gamma-irradiation.

Authors:  J S Damiano; L A Hazlehurst; W S Dalton
Journal:  Leukemia       Date:  2001-08       Impact factor: 11.528

Review 7.  Mechanisms of cancer drug resistance.

Authors:  Michael M Gottesman
Journal:  Annu Rev Med       Date:  2002       Impact factor: 13.739

Review 8.  Mechanisms associated with cell adhesion mediated drug resistance (CAM-DR) in hematopoietic malignancies.

Authors:  L A Hazlehurst; W S Dalton
Journal:  Cancer Metastasis Rev       Date:  2001       Impact factor: 9.264

9.  A neural network model for cell classification based on single-cell biomechanical properties.

Authors:  Eric M Darling; Farshid Guilak
Journal:  Tissue Eng Part A       Date:  2008-09       Impact factor: 3.845

10.  In situ metabolic profiling of single cells by laser ablation electrospray ionization mass spectrometry.

Authors:  Bindesh Shrestha; Akos Vertes
Journal:  Anal Chem       Date:  2009-10-15       Impact factor: 6.986

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  14 in total

1.  Towards early monitoring of chemotherapy-induced drug resistance based on single cell metabolomics: Combining single-probe mass spectrometry with machine learning.

Authors:  Renmeng Liu; Mei Sun; Genwei Zhang; Yunpeng Lan; Zhibo Yang
Journal:  Anal Chim Acta       Date:  2019-09-25       Impact factor: 6.558

2.  Integrated Cell Manipulation Platform Coupled with the Single-probe for Mass Spectrometry Analysis of Drugs and Metabolites in Single Suspension Cells.

Authors:  Shawna J Standke; Devon H Colby; Ryan C Bensen; Anthony W G Burgett; Zhibo Yang
Journal:  J Vis Exp       Date:  2019-06-21       Impact factor: 1.355

3.  Lipid Heterogeneity between Astrocytes and Neurons Revealed by Single-Cell MALDI-MS Combined with Immunocytochemical Classification.

Authors:  Elizabeth K Neumann; Troy J Comi; Stanislav S Rubakhin; Jonathan V Sweedler
Journal:  Angew Chem Int Ed Engl       Date:  2019-03-29       Impact factor: 15.336

4.  Redesigning the T-probe for mass spectrometry analysis of online lysis of non-adherent single cells.

Authors:  Yanlin Zhu; Renmeng Liu; Zhibo Yang
Journal:  Anal Chim Acta       Date:  2019-07-31       Impact factor: 6.558

5.  Integrating a generalized data analysis workflow with the Single-probe mass spectrometry experiment for single cell metabolomics.

Authors:  Renmeng Liu; Genwei Zhang; Mei Sun; Xiaoliang Pan; Zhibo Yang
Journal:  Anal Chim Acta       Date:  2019-03-11       Impact factor: 6.558

6.  Quantification of Drug Molecules in Live Single Cells Using the Single-Probe Mass Spectrometry Technique.

Authors:  Ning Pan; Shawna J Standke; Naga Rama Kothapalli; Mei Sun; Ryan C Bensen; Anthony W G Burgett; Zhibo Yang
Journal:  Anal Chem       Date:  2019-06-27       Impact factor: 6.986

7.  Combining Mass Spectrometry with Paternò-Büchi Reaction to Determine Double-Bond Positions in Lipids at the Single-Cell Level.

Authors:  Yanlin Zhu; Wenhua Wang; Zhibo Yang
Journal:  Anal Chem       Date:  2020-07-27       Impact factor: 6.986

8.  Multimodal Imaging of Amyloid Plaques: Fusion of the Single-Probe Mass Spectrometry Image and Fluorescence Microscopy Image.

Authors:  Xiang Tian; Boer Xie; Zhu Zou; Yun Jiao; Li-En Lin; Chih-Lin Chen; Cheng-Chih Hsu; Junmin Peng; Zhibo Yang
Journal:  Anal Chem       Date:  2019-09-26       Impact factor: 8.008

9.  Prediction of future gastric cancer risk using a machine learning algorithm and comprehensive medical check-up data: A case-control study.

Authors:  Junichi Taninaga; Yu Nishiyama; Kazutoshi Fujibayashi; Toshiaki Gunji; Noriko Sasabe; Kimiko Iijima; Toshio Naito
Journal:  Sci Rep       Date:  2019-08-27       Impact factor: 4.379

Review 10.  Single cell metabolomics using mass spectrometry: Techniques and data analysis.

Authors:  Renmeng Liu; Zhibo Yang
Journal:  Anal Chim Acta       Date:  2020-11-25       Impact factor: 6.558

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