Literature DB >> 33384110

Single cell metabolomics using mass spectrometry: Techniques and data analysis.

Renmeng Liu1, Zhibo Yang2.   

Abstract

Mass spectrometry (MS) based techniques are gaining popularity for metabolomics research due to their high sensitivity, wide detection range, and capability of molecular identification. Utilizing such powerful technique to explore the cellular metabolism at the single cell level not only appreciates the subtle cell-to-cell difference (i.e., cell heterogeneity), but also gains biological merits corresponding to individual cells or small cell subpopulations. In this review article, we first briefly summarize recent advances in single cell MS experimental techniques, and then emphasize on the single cell metabolomics data analysis approaches. Through implementation of statistical analysis and more advanced data analysis methods, single cell metabolomics is expected to find more potential applications in the translational and clinical fields in the future.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Biological variance vs technical variance; Machine learning; Single cell mass spectrometry; Single cell metabolomics; Univariate and multivariate analysis; Vacuum-based and ambient mass spectrometry

Mesh:

Year:  2020        PMID: 33384110      PMCID: PMC7775990          DOI: 10.1016/j.aca.2020.11.020

Source DB:  PubMed          Journal:  Anal Chim Acta        ISSN: 0003-2670            Impact factor:   6.558


  105 in total

1.  Single cell heterogeneity: why unstable genomes are incompatible with average profiles.

Authors:  Batoul Y Abdallah; Steven D Horne; Joshua B Stevens; Guo Liu; Andrew Y Ying; Barbara Vanderhyden; Stephen A Krawetz; Root Gorelick; Henry Hq Heng
Journal:  Cell Cycle       Date:  2013-10-01       Impact factor: 4.534

2.  Biomolecular imaging with a C60-SIMS/MALDI dual ion source hybrid mass spectrometer: instrumentation, matrix enhancement, and single cell analysis.

Authors:  Eric J Lanni; Sage J B Dunham; Peter Nemes; Stanislav S Rubakhin; Jonathan V Sweedler
Journal:  J Am Soc Mass Spectrom       Date:  2014-09-03       Impact factor: 3.109

3.  Graphene quantum dots enhanced ToF-SIMS for single-cell imaging.

Authors:  Hao-Wen Li; Xin Hua; Yi-Tao Long
Journal:  Anal Bioanal Chem       Date:  2019-02-22       Impact factor: 4.142

4.  Quantification of Drug Molecules in Live Single Cells Using the Single-Probe Mass Spectrometry Technique.

Authors:  Ning Pan; Shawna J Standke; Naga Rama Kothapalli; Mei Sun; Ryan C Bensen; Anthony W G Burgett; Zhibo Yang
Journal:  Anal Chem       Date:  2019-06-27       Impact factor: 6.986

5.  Single-cell lipidomics: characterizing and imaging lipids on the surface of individual Aplysia californica neurons with cluster secondary ion mass spectrometry.

Authors:  Melissa K Passarelli; Andrew G Ewing; Nicholas Winograd
Journal:  Anal Chem       Date:  2013-02-04       Impact factor: 6.986

6.  In situ metabolic profiling of single cells by laser ablation electrospray ionization mass spectrometry.

Authors:  Bindesh Shrestha; Akos Vertes
Journal:  Anal Chem       Date:  2009-10-15       Impact factor: 6.986

7.  METLIN: A Technology Platform for Identifying Knowns and Unknowns.

Authors:  Carlos Guijas; J Rafael Montenegro-Burke; Xavier Domingo-Almenara; Amelia Palermo; Benedikt Warth; Gerrit Hermann; Gunda Koellensperger; Tao Huan; Winnie Uritboonthai; Aries E Aisporna; Dennis W Wolan; Mary E Spilker; H Paul Benton; Gary Siuzdak
Journal:  Anal Chem       Date:  2018-02-09       Impact factor: 6.986

8.  ZIP4 Increases Expression of Transcription Factor ZEB1 to Promote Integrin α3β1 Signaling and Inhibit Expression of the Gemcitabine Transporter ENT1 in Pancreatic Cancer Cells.

Authors:  Mingyang Liu; Yuqing Zhang; Jingxuan Yang; Xiaobo Cui; Zhijun Zhou; Hanxiang Zhan; Kai Ding; Xiang Tian; Zhibo Yang; Kar-Ming A Fung; Barish H Edil; Russell G Postier; Michael S Bronze; Martin E Fernandez-Zapico; Marc P Stemmler; Thomas Brabletz; Yi-Ping Li; Courtney W Houchen; Min Li
Journal:  Gastroenterology       Date:  2019-11-09       Impact factor: 22.682

9.  Quantification of microenvironmental metabolites in murine cancers reveals determinants of tumor nutrient availability.

Authors:  Mark R Sullivan; Laura V Danai; Caroline A Lewis; Sze Ham Chan; Dan Y Gui; Tenzin Kunchok; Emily A Dennstedt; Matthew G Vander Heiden; Alexander Muir
Journal:  Elife       Date:  2019-04-16       Impact factor: 8.140

10.  Single-cell tracking demonstrates copper chaperone Atox1 to be required for breast cancer cell migration.

Authors:  Stéphanie Blockhuys; Xiaolu Zhang; Pernilla Wittung-Stafshede
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-13       Impact factor: 11.205

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  6 in total

Review 1.  Single cell metabolism: current and future trends.

Authors:  Ahmed Ali; Shawn Davidson; Ernest Fraenkel; Ian Gilmore; Thomas Hankemeier; Jennifer A Kirwan; Andrew N Lane; Ingela Lanekoff; Mioara Larion; Laura-Isobel McCall; Michael Murphy; Jonathan V Sweedler; Caigang Zhu
Journal:  Metabolomics       Date:  2022-10-01       Impact factor: 4.747

2.  Single Cell Technologies to Dissect Heterogenous Immune Cell Therapy Products.

Authors:  Katherine Mueller; Krishanu Saha
Journal:  Curr Opin Biomed Eng       Date:  2021-09-15

Review 3.  Optimization of metabolomic data processing using NOREVA.

Authors:  Jianbo Fu; Ying Zhang; Yunxia Wang; Hongning Zhang; Jin Liu; Jing Tang; Qingxia Yang; Huaicheng Sun; Wenqi Qiu; Yinghui Ma; Zhaorong Li; Mingyue Zheng; Feng Zhu
Journal:  Nat Protoc       Date:  2021-12-24       Impact factor: 13.491

Review 4.  The Regulation of RNA Modification Systems: The Next Frontier in Epitranscriptomics?

Authors:  Matthias R Schaefer
Journal:  Genes (Basel)       Date:  2021-02-26       Impact factor: 4.096

Review 5.  The Integration of Metabolomics with Other Omics: Insights into Understanding Prostate Cancer.

Authors:  Eleazer P Resurreccion; Ka-Wing Fong
Journal:  Metabolites       Date:  2022-05-27

Review 6.  The foundations and development of lipidomics.

Authors:  Xianlin Han; Richard W Gross
Journal:  J Lipid Res       Date:  2021-12-22       Impact factor: 5.922

  6 in total

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