| Literature DB >> 30525118 |
Hiroshi Shiraku1,2, Mitsuko Nakashima3,4, Saoko Takeshita5, Chai-Soon Khoo6, Muzhirah Haniffa7, Gaik-Siew Ch'ng7, Kazuma Takada1, Keisuke Nakajima1, Masayasu Ohta1, Tohru Okanishi8, Sotaro Kanai8, Ayataka Fujimoto9, Hirotomo Saitsu4, Naomichi Matsumoto3, Mitsuhiro Kato10.
Abstract
OBJECTIVE: Vitamin B6-dependent epilepsies are treatable disorders caused by variants in several genes, such as ALDH7A1,PNPO, and others. Recently, biallelic variants in PLPBP, formerly known as PROSC, were identified as a novel cause of vitamin B6-dependent epilepsies. Our objective was to further delineate the phenotype of PLPBP mutation.Entities:
Keywords: Development; Electroencephalography; Pyridoxal phosphate; Pyridoxine; Vitamin B6
Year: 2018 PMID: 30525118 PMCID: PMC6276781 DOI: 10.1002/epi4.12272
Source DB: PubMed Journal: Epilepsia Open ISSN: 2470-9239
Clinical features of patients with PLPBP mutations
| Feature | Patient 1 | Patient 2 | Patient 3 | Patient 4 | Previous reports |
|---|---|---|---|---|---|
| Gender | Male | Male | Male | Male | Male 6, female 5 |
| Current age | 3 y, 6 mo | 8 y | 3 y | 5 y, 5 mo | 4.5 mo to 30 y |
| Ethnicity | Japanese | Japanese | Malaysian | Malaysian | Syrian in a family 3, Indian 2, Italian 2, German 2, Arabic 1, Swiss‐Italian 1 |
| Consanguinity | No | No | Yes | No | Yes 5 from 3 families, no 6 |
|
| c.134T>A (p.Val45Asp) and c.122G>A (p.Arg41Gln) | c.122G>A (p.Arg41Gln) and c.122G>A (p.Arg41Gln) | c.199G>A (p.Glu67Lys) and c.199G>A (p.Glu67Lys) | c.614G>A (p.Arg205Gln) and c.614G>A (p.Arg205Gln) | Missense 7, nonsense 1, frameshift 1, splicing 2 |
| Abnormalities during pregnancy | No | No | Yes | No | Yes 3, no 8 |
| Gestational age in weeks | 39 | 40 | 33 | 39 | 32–40 (average 37) |
| Fetal distress | No | No | No | No | Yes 5, no 6 |
| Birth HC percentage | 25–50% | 50% | 10–50% | 25–50% | <10% 4, 25–50% 2, 50% 1, 50–75% 2, 90% 1 |
| Seizure onset | 10 days | 3 mo | <24 h | 34 days | <24 h 6, 2–7 days 3, 9 days 1, 1 mo 1 |
| Seizure type | Tonic, clonic, SIA, GTC | Tonic, clonic, GTC, SIA (lip‐smacking or grimacing) | GTC, myoclonic | GTC, myoclonic | Tonic 5, GTC 6, myoclonic 4, grimacing 4, eye deviation 2 |
| Interictal EEG findings | Reduced BGA and multifocal SW activity | Focal discharges | S‐B | Diffuse slow polymorphic activity | S‐B 6, reduced BGA 3, focal or multifocal 2, discontinuity 1, abnormal BGA 1 |
| Age at first vitamin B6 administration | 25 days | 8 y | 5 wk | 5 y, 5 mo | <7 days 2, 9 days 1, 28 days 1, NR 7 |
| Age at first vitamin B6 administration | 25 days | 8 y | 5 wk | 5 y, 5 mo | <7 days 2, 9 days 1, 28 days 1, NR 7 |
| Type of vitamin B6 (PN or PLP) | PLP | PN | PN | PN | PN 7, PN/PLP (seizures controlled with PLP) 4 |
| Vitamin B6 effect | Improved seizure control and EEG | Prompt cessation of seizures | No apparent improvement | Improved seizure control | Prompt cessation of seizures 10, no effect on EEG 1 |
| Adverse effects of vitamin B6 | None | None | None | None | None 10, prolonged sleep and muscle hypotonia 1 |
| Vitamin B6 withdrawal | Yes, recurrent seizures and irritability at age 1 y, 10 mo | No | No | No | Yes 4, no 5, NR 2 |
| Current dose of vitamin B6 | PLP 200 mg/day | NA | PN 100 mg/day | PN 100 mg/day | 150–450 mg/day |
| Other AEDs | CBZ 10 mg/kg/day | No | VPA, PB, CZP, PHT | CZP, TPM | Yes 6, no 4, died 1 |
| Response to AEDs | Partially effective: PB | Partially effective: CLB | Refractory to VPA, PB, LEV, and CZP | Partially effective: CLB, TPM | No to minimal 4, yes 3, better effects with PN/PLP 3, NR 1 |
| Course of epilepsy | Seizure‐free at age 2 y | Seizure‐free after administration of PN | Tonic–clonic seizure once a month | Only 1 febrile seizure after administration of PN | Breakthrough seizure with fever 6, sporadic afebrile seizure 2, photosensitive seizure 1, NR 1, died 1 |
| Delay of motor development | Yes, not delayed in GM | Yes | Yes, right hemiparalysis and dystonic posture | Yes | Yes 5, delayed but caught‐up 1, no 4, died 1 |
| Delay of speech development | Yes | Yes | Yes | Yes | Yes 6, no 4, died 1 |
| Intellectual disability | Yes, mild | Yes, moderate | Yes, profound | Yes, severe to profound | Yes 7, no 2, NA 1, died 1 |
| Current HC | 25–50% | NA | <10% | <10% | Yes 6, no 5 |
| Acquired microcephaly | No | No | Yes | Yes | Yes 6, no 5 |
| Involuntary movements | No | No | Yes | Yes, temporarily | No 4, NA 7 |
| Brain MRI | Normal | Broad gyri and shallow sulci, microcephaly with underdevelopment of white matter | Broad gyri and shallow sulci, microcephaly with underdevelopment of white matter; periventricular cyst | Broad gyri and shallow sulci, microcephaly with underdevelopment of white matter | Normal 7, broad gyri and shallow sulci, microcephaly with underdevelopment of white matter 4, periventricular cyst 3 |
| Amino acids in plasma before vitamin B6 supply | Normal | Normal | Elevated glycine and threonine | NA | Some amino acids elevated in plasma 1, normal 2, NA 8 |
| Amino acids in CSF | NA | NA | Elevated glycine and threonine | NA | Some amino acids elevated in CSF 1, normal 2, NA 8 |
AEDs, antiepileptic drugs; BGA, background activity; CBZ, carbamazepine; CLB, clobazam; CSF, cerebrospinal fluid; CZP, clonazepam; EEG, electroencephalography; GM, gross movement; GTC, generalized tonic convulsion; HC, head circumference; LEV, levetiracetam; mo, month(s); MRI, magnetic resonance imaging; NA, not available; NR, no response; PB, phenobarbital; PHT, phenytoin; PLP, pyridoxal phosphate; PN, pyridoxine; S‐B, suppression‐burst; SIA, seizures with impaired awareness; SW, spike and slow wave; TPM, topiramate; VPA, valproic acid; wk, week(s); y, year(s).
Prediction of pathogenicity of PLPBP variants
| Patient | Mutation | Origin | ExAC allele frequency | SIFT | PolyPhen2 HumVar | CADD phred | M‐CAP | GERP | Phast cons |
|---|---|---|---|---|---|---|---|---|---|
| 1 | c.122G>A: p.(Arg41Gln) | Compound heterozygous (maternal) | 4.061 × 10−6 | 0.040 | 0.978 | 36 | 0.031 | 5.5999 | 1 |
| c.134T>A: p.(Val45Asp) | Compound heterozygous (paternal) | –– | 0.000 | 1 | 29.3 | 0.331 | 5.61 | 1 | |
| 2 | c.122G>A: p.(Arg41Gln) | Homozygous | 4.061 × 10−6 | 0.040 | 0.978 | 36 | 0.031 | 5.5999 | 1 |
| 3 | c.199G>A: p.(Glu67Lys) | Homozygous | 4.061 × 10−6 | 0.000 | 1 | 35 | 0.297 | 5.61 | 1 |
| 4 | c.614G>A: p.(Arg205Gln) | Homozygous | 1.218 × 10−6 | 0.054 | 0.909 | 19.59 | 0.021 | 5.190 | 0.956 |
CADD, Combined Annotation Dependent Depletion; ExAC, Exome Aggregation Consortium; GERP, Genomic Evolutionary Rate Profiling; M‐CAP, Mendelian Clinically Applicable Pathogenicity Score; SIFT: Sorting Intolerant From Tolerant.