Literature DB >> 30525118

PLPBP mutations cause variable phenotypes of developmental and epileptic encephalopathy.

Hiroshi Shiraku1,2, Mitsuko Nakashima3,4, Saoko Takeshita5, Chai-Soon Khoo6, Muzhirah Haniffa7, Gaik-Siew Ch'ng7, Kazuma Takada1, Keisuke Nakajima1, Masayasu Ohta1, Tohru Okanishi8, Sotaro Kanai8, Ayataka Fujimoto9, Hirotomo Saitsu4, Naomichi Matsumoto3, Mitsuhiro Kato10.   

Abstract

OBJECTIVE: Vitamin B6-dependent epilepsies are treatable disorders caused by variants in several genes, such as ALDH7A1,PNPO, and others. Recently, biallelic variants in PLPBP, formerly known as PROSC, were identified as a novel cause of vitamin B6-dependent epilepsies. Our objective was to further delineate the phenotype of PLPBP mutation.
METHODS: We identified 4 unrelated patients harboring a total of 4 variants in PLPBP, including 3 novel variants, in a cohort of 700 patients with developmental and epileptic encephalopathies. Clinical information in each case was collected.
RESULTS: Each patient had a different clinical course of epilepsy, with seizure onset from the first day of life to 3 months of age. Generalized tonic-clonic seizures were commonly noted. Myoclonic seizures or focal seizures were also observed in 2 patients. Interictal electroencephalography showed variable findings, such as suppression burst, focal or multifocal discharges, and diffuse slow activity. Unlike previous reports, all the patients had some degree of intellectual disability, although some of them had received early treatment with vitamin B6, suggesting that different mutation types influence the severity and outcome of the seizures. SIGNIFICANCE: PLPBP variants should be regarded as among the causative genes of developmental and epileptic encephalopathy, even when it occurs after the neonatal period. Early diagnosis and proper treatment with pyridoxine or pyridoxal phosphate is essential to improve the neurologic prognosis in neonates or young children with poorly controlled seizures.

Entities:  

Keywords:  Development; Electroencephalography; Pyridoxal phosphate; Pyridoxine; Vitamin B6

Year:  2018        PMID: 30525118      PMCID: PMC6276781          DOI: 10.1002/epi4.12272

Source DB:  PubMed          Journal:  Epilepsia Open        ISSN: 2470-9239


PLPBP mutations have been reported as a novel cause of vitamin B6–dependent epilepsy in 11 patients Four patients harboring PLPBP mutation were identified among 700 patients with developmental and epileptic encephalopathies The first seizure occurs even after neonatal period, causing delay in the administration of vitamin B6 Intellectual disability is common even in the patients who receive vitamin B6 in early life and whose seizures are controlled Developmental and epileptic encephalopathies1 or early onset epileptic encephalopathies (EOEEs) are characterized by refractory seizures starting in early infancy, mainly during the first year of life, followed by developmental impairment, with characteristic age‐dependent seizure types and electroencephalography (EEG) findings. Recent advances in gene analysis using next‐generation sequencing have facilitated detection of mutations in the causative genes of EOEEs, as 67 genes and phenotypic series are listed for early infantile epileptic encephalopathy in the Online Mendelian Inheritance in Man (OMIM) database (https://omim.org/phenotypicSeries/PS308350). Some EOEEs, known as vitamin B6–dependent epilepsy, respond to specific treatments, such as vitamin B6. The known biologic mechanisms underlying vitamin B6–dependent epilepsies are incomplete formation or transport of pyridoxal 5′‐phosphate (PLP) or its inactivation by metabolites.2 Four genes have been identified to be responsible for vitamin B6–dependent epilepsy.3 Variants of ALDH7A1, which codes for antiquitin or α‐aminoadipic semialdehyde (AASA) dehydrogenase, were the first genes found in patients with vitamin B6–dependent epilepsy. Patients with ALDH7A1 variants generally present with seizures soon after birth. They show multiple types of seizures associated with a variety of EEG abnormalities. In most patients, administration of pyridoxine or PLP results in cessation of seizures within minutes, accompanied by depressed amplitude on EEG. AASA, piperidine‐6‐carboxylate (P6C), and pipecolic acid in the plasma, urine, and cerebrospinal fluid (CSF) serve as specific biomarkers of vitamin B6–dependent epilepsy caused by ALDH7A1 mutations. AASA dehydrogenase deficiency caused by ALDH7A1 mutations or pyridoxin‐dependent epilepsy is a lysine catabolism defect, and a lysine‐restricted diet and high‐dose arginine supplementation are additional options to improve developmental outcome and epilepsy control.2 Hyperprolinemia type II (HP II) is caused by defective delta‐pyrroline 5‐carboxylate (P5C) dehydrogenase encoded by ALDH4A1 and is the second defect leading to increased utilization of PLP. Overdose of L‐D‐P5C inactivates PLP as a result of a Knoevenagel condensation4 and ultimately causes generalized seizures in late infancy or childhood and intellectual disability. In many patients with HP II, seizures are triggered by fever and may be controlled with general anticonvulsants. Severe infantile hypophosphatasia, which is a rare metabolic disease with the hallmark finding of deficient activity of serum tissue nonspecific alkaline phosphatase (TNSALP) encoded by the ALPL gene, can present with pyridoxine‐responsive seizures. Pyridoxine can cross the blood–brain barrier, but PLP cannot. TNSALP is necessary for converting PLP to pyridoxine. Defective TNSALP activity results in a deficiency of PLP in the brain; patients with TNSALP deficiency have intractable seizures responsive to pyridoxine but not to PLP. Once enzyme replacement therapy is initiated, patients with TNSALP deficiency can stop pyridoxine supplementation without recurrence of seizures.5 PLP‐dependent epilepsy is caused by PNPO mutations. This gene encodes PLP oxidase, which converts pyridoxine phosphate and pyridoxamine phosphate into PLP. Patients with PNPO deficiency present with neonatal seizures up to 2 weeks of age, showing myoclonic seizure and status epilepticus, and often become encephalopathic, with various abnormal neurologic presentations. The seizures are resistant to common anticonvulsants and pyridoxine, but administration of PLP leads to prompt cessation of the seizures. These disorders are vitamin B6–dependent or vitamin B6–responsive epilepsies, and it should be noted that each disorder demonstrates a different potency between pyridoxine and PLP, as mentioned earlier. More than 150 enzymes are PLP dependent, and most are expressed and function in the central nervous system. Furthermore, there are many cases with vitamin B6–dependent epilepsy that remain to be resolved. Recently, Darin et al.6 found homozygous or compound heterozygous variants of pyridoxal phosphate‐binding protein (PLPBP), formerly known as PROSC, proline synthetase co‐transcribed (bacterial homolog), designated by HUGO gene nomenclature committee (https://www.genenames.org) in 7 patients of 5 families with vitamin B6–dependent epilepsy. These variants affect intracellular PLP homeostasis, leading to seizures and altered amino acid or neurotransmitter profiles as a consequence of defective enzyme activity of γ‐aminobutyric acid (GABA) transaminase or aromatic L‐amino acid decarboxylase (AADC), both of which require PLP as a coenzyme. We present here clinical and molecular data from 4 unrelated patients harboring a total of 4 variants (3 novel), including homozygous or compound heterozygous variants in PLPBP, identified in a cohort of 700 patients with childhood‐onset epileptic encephalopathies.

Methods

Subjects

A total of 700 individuals with developmental and epileptic encephalopathies were analyzed. Among them, 210 individuals were analyzed with their parents. Clinical information was obtained and peripheral blood leukocytes were collected from the patients and their parents after obtaining their written informed consent. DNA was extracted using QuickGene‐610L (Fujifilm, Tokyo, Japan) according to the manufacturer's instructions. The study was approved by the institutional review boards of the Yokohama City University School of Medicine and the Showa University School of Medicine.

Whole‐exome sequencing

Whole‐exome sequencing (WES) was performed as described previously.7 Patient DNA was captured with SureSelect Human All Exon V4 or V5 kits (Agilent Technologies, Santa Clara, CA, U.S.A.) and sequenced on an Illumina HiSeq2000 or 2500 (Illumina, San Diego, CA, U.S.A.) with 101‐bp paired‐end reads. Image analysis and base calling were performed by sequence control software real‐time analysis and CASAVA software v1.8 (Illumina). Reads were aligned to the human reference genome sequence (UCSC hg19, NCBI build 37) using Novoalign (Novocraft Technologies, Jaya, Malaysia). Polymerase chain reaction (PCR) duplicates were excluded by Picard (http://picard.sourceforge.net/). Single‐nucleotide variants (SNVs) and small insertion/deletions (indels) were identified with the Genome Analysis Toolkit UnifiedGenotyper (6) and were filtered according to the Broad Institute best‐practice guidelines (version 3). Variants that were selected through the filters were annotated using ANNOVAR.8 Variant pathogenicity was evaluated by SIFT (http://sift.jcvi.org/), Polyphen‐2 (http://genetics.bwh.harvard.edu/pph2/), M‐CAP (http://bejerano.stanford.edu/mcap/), and CADD (http://cadd.gs.washington.edu/). Conservation of nucleotides was assessed with GERP (http://mendel.stanford.edu/SidowLab/downloads/GERP/index.html) and PhastCons (http://compgen.cshl.edu/phast/).

Results

Clinical features

Table 1 summarizes the clinical information of the 4 current patients and previously reported cases6, 9 with PLPBP mutations. As an illustrative case, the clinical history of patient 2 is given here, and the clinical histories of other patients are provided as Appendix S1.
Table 1

Clinical features of patients with PLPBP mutations

FeaturePatient 1Patient 2Patient 3Patient 4Previous reports6, 9
GenderMaleMaleMaleMaleMale 6, female 5
Current age3 y, 6 mo8 y3 y5 y, 5 mo4.5 mo to 30 y
EthnicityJapaneseJapaneseMalaysianMalaysianSyrian in a family 3, Indian 2, Italian 2, German 2, Arabic 1, Swiss‐Italian 1
ConsanguinityNoNoYesNoYes 5 from 3 families, no 6
PLPBP mutationc.134T>A (p.Val45Asp) and c.122G>A (p.Arg41Gln)c.122G>A (p.Arg41Gln) and c.122G>A (p.Arg41Gln)c.199G>A (p.Glu67Lys) and c.199G>A (p.Glu67Lys)c.614G>A (p.Arg205Gln) and c.614G>A (p.Arg205Gln)Missense 7, nonsense 1, frameshift 1, splicing 2
Abnormalities during pregnancyNoNoYesNoYes 3, no 8
Gestational age in weeks3940333932–40 (average 37)
Fetal distressNoNoNoNoYes 5, no 6
Birth HC percentage25–50%50%10–50%25–50%<10% 4, 25–50% 2, 50% 1, 50–75% 2, 90% 1
Seizure onset10 days3 mo<24 h34 days<24 h 6, 2–7 days 3, 9 days 1, 1 mo 1
Seizure typeTonic, clonic, SIA, GTCTonic, clonic, GTC, SIA (lip‐smacking or grimacing)GTC, myoclonicGTC, myoclonicTonic 5, GTC 6, myoclonic 4, grimacing 4, eye deviation 2
Interictal EEG findingsReduced BGA and multifocal SW activityFocal dischargesS‐BDiffuse slow polymorphic activityS‐B 6, reduced BGA 3, focal or multifocal 2, discontinuity 1, abnormal BGA 1
Age at first vitamin B6 administration25 days8 y5 wk5 y, 5 mo<7 days 2, 9 days 1, 28 days 1, NR 7
Age at first vitamin B6 administration25 days8 y5 wk5 y, 5 mo<7 days 2, 9 days 1, 28 days 1, NR 7
Type of vitamin B6 (PN or PLP)PLPPNPNPNPN 7, PN/PLP (seizures controlled with PLP) 4
Vitamin B6 effectImproved seizure control and EEGPrompt cessation of seizuresNo apparent improvementImproved seizure controlPrompt cessation of seizures 10, no effect on EEG 1
Adverse effects of vitamin B6 NoneNoneNoneNoneNone 10, prolonged sleep and muscle hypotonia 1
Vitamin B6 withdrawalYes, recurrent seizures and irritability at age 1 y, 10 moNoNoNoYes 4, no 5, NR 2
Current dose of vitamin B6 PLP 200 mg/dayNAPN 100 mg/dayPN 100 mg/day150–450 mg/day
Other AEDsCBZ 10 mg/kg/dayNoVPA, PB, CZP, PHTCZP, TPMYes 6, no 4, died 1
Response to AEDsPartially effective: PBPartially effective: CLBRefractory to VPA, PB, LEV, and CZPPartially effective: CLB, TPMNo to minimal 4, yes 3, better effects with PN/PLP 3, NR 1
Course of epilepsySeizure‐free at age 2 ySeizure‐free after administration of PNTonic–clonic seizure once a monthOnly 1 febrile seizure after administration of PNBreakthrough seizure with fever 6, sporadic afebrile seizure 2, photosensitive seizure 1, NR 1, died 1
Delay of motor developmentYes, not delayed in GMYesYes, right hemiparalysis and dystonic postureYesYes 5, delayed but caught‐up 1, no 4, died 1
Delay of speech developmentYesYesYesYesYes 6, no 4, died 1
Intellectual disabilityYes, mildYes, moderateYes, profoundYes, severe to profoundYes 7, no 2, NA 1, died 1
Current HC25–50%NA<10%<10%Yes 6, no 5
Acquired microcephalyNoNoYesYesYes 6, no 5
Involuntary movementsNoNoYesYes, temporarilyNo 4, NA 7
Brain MRINormalBroad gyri and shallow sulci, microcephaly with underdevelopment of white matterBroad gyri and shallow sulci, microcephaly with underdevelopment of white matter; periventricular cystBroad gyri and shallow sulci, microcephaly with underdevelopment of white matterNormal 7, broad gyri and shallow sulci, microcephaly with underdevelopment of white matter 4, periventricular cyst 3
Amino acids in plasma before vitamin B6 supplyNormalNormalElevated glycine and threonineNASome amino acids elevated in plasma 1, normal 2, NA 8
Amino acids in CSFNANAElevated glycine and threonineNASome amino acids elevated in CSF 1, normal 2, NA 8

AEDs, antiepileptic drugs; BGA, background activity; CBZ, carbamazepine; CLB, clobazam; CSF, cerebrospinal fluid; CZP, clonazepam; EEG, electroencephalography; GM, gross movement; GTC, generalized tonic convulsion; HC, head circumference; LEV, levetiracetam; mo, month(s); MRI, magnetic resonance imaging; NA, not available; NR, no response; PB, phenobarbital; PHT, phenytoin; PLP, pyridoxal phosphate; PN, pyridoxine; S‐B, suppression‐burst; SIA, seizures with impaired awareness; SW, spike and slow wave; TPM, topiramate; VPA, valproic acid; wk, week(s); y, year(s).

Clinical features of patients with PLPBP mutations AEDs, antiepileptic drugs; BGA, background activity; CBZ, carbamazepine; CLB, clobazam; CSF, cerebrospinal fluid; CZP, clonazepam; EEG, electroencephalography; GM, gross movement; GTC, generalized tonic convulsion; HC, head circumference; LEV, levetiracetam; mo, month(s); MRI, magnetic resonance imaging; NA, not available; NR, no response; PB, phenobarbital; PHT, phenytoin; PLP, pyridoxal phosphate; PN, pyridoxine; S‐B, suppression‐burst; SIA, seizures with impaired awareness; SW, spike and slow wave; TPM, topiramate; VPA, valproic acid; wk, week(s); y, year(s).

Patient 2

Patient 2 was born at full term without asphyxia. At the age of 3 months, he had an episode of generalized tonic seizure with eye conversion to the upper direction after suddenly crying for several minutes. At 11 months of age, he had repeated tonic seizures, with or without fever. Brain magnetic resonance imaging (MRI) and interictal EEG were normal at that time. Treatment with antiepileptic drugs (AEDs) such as phenobarbital, topiramate, carbamazepine, valproic acid, lamotrigine, and levetiracetam did not ameliorate his seizures. Clobazam was temporarily effective; however, the frequency of the seizures ranged from several times a week to once a month, and he had several episodes of status epilepticus in a year. After exacerbation of seizures, he showed developmental delay (meaningful words at 12 months and walking without support at 2 years and 9 months). After the age of 2 years, brain MRI showed mild cerebral atrophy (Figure S2A). At the age of 7 years, he had several episodes of status epilepticus every day and needed continuous infusion of midazolam (MDL) for seizures. He also showed episodes of emotional seizures with eye‐opening, a frightened expression while saying “scared, scared…,” clinging to his mother, and screaming loudly followed by generalized tonic seizures. Vagus nerve stimulation (VNS) therapy was introduced, and the episodes of status epilepticus ceased for 4 months but then relapsed to the same as before VNS therapy. An intelligence test at that time showed moderate intellectual disability (developmental quotient 39). On the assumption of mid‐temporal lobe epilepsy, subdural electrodes were placed, and EEG during his ictal state showed fast activities superimposed on slow waves or 3‐ to 4‐Hz spike‐and‐slow wave bursts at the right hippocampus and amygdala. He underwent right anterotemporal lobectomy and hippocampal amygdala resection at 8 years, but he had seizures every day, even after the surgery. After a PLPBP mutation was identified, pyridoxine was administered at 8 years of age, and his seizures dramatically disappeared with no AEDs other than pyridoxine.

Variant screening

Using Trio‐WES data from 210 families, we searched for variants that were consistent with autosomal dominant and autosomal or X‐linked recessive inheritance as described previously.10 We filtered out common variants with minor allele frequencies ≥1% in the single nucleotide polymorphism database 137, the 6,500 exomes of the National Heart, Lung, and Blood Institute exome project, and the Exome Aggregation Consortium (ExAC, Cambridge, MA, U.S.A.),11 and variants found in >5 of our in‐house 575 control exomes. In family 1, we found 6 possible variants in 3 genes with autosomal recessive models, but only compound heterozygous PLPBP variants c.122G>A: p.(Arg41Gln) and c.134T>A: p.(Val45Asp), were predicted to be deleterious. Case‐only WES in 3 individuals identified 3 homozygous PLPBP variants, c.122G>A: p.(Arg41Gln), c.199G>A: p.(Glu67Lys), and c.614G>A: p.(Arg205Gln), in patients 2, 3, and 4, respectively. All 4 variants were evolutionarily conserved, and 3 variants, c.122G>A: p.(Arg41Gln), c.134T>A: p.(Val45Asp), and c.199G>A: p.(Glu67Lys), were predicted to be deleterious. Although the c.614G>A: p.(Arg205Gln) variant was predicted to be damaging by only one of 4 bioinformatical tools (Table 2), the same variant had been identified in a patient with vitamin B6–dependent epilepsy.9 Segregation of PLPBP variants was examined by Sanger sequencing on an ABI 3130xl Genetic Analyzer (Applied Biosystems, Foster City, CA, U.S.A.), using trio samples (patients and their parents) except for patient 2, because his parental samples were unavailable.
Table 2

Prediction of pathogenicity of PLPBP variants

PatientMutationOriginExAC allele frequencySIFTPolyPhen2 HumVarCADD phredM‐CAPGERPPhast cons
1c.122G>A: p.(Arg41Gln)Compound heterozygous (maternal)4.061 × 10−6 0.0400.978360.0315.59991
c.134T>A: p.(Val45Asp)Compound heterozygous (paternal)––0.000129.30.3315.611
2c.122G>A: p.(Arg41Gln)Homozygous4.061 × 10−6 0.0400.978360.0315.59991
3c.199G>A: p.(Glu67Lys)Homozygous4.061 × 10−6 0.0001350.2975.611
4c.614G>A: p.(Arg205Gln)Homozygous1.218 × 10−6 0.0540.90919.590.0215.1900.956

CADD, Combined Annotation Dependent Depletion; ExAC, Exome Aggregation Consortium; GERP, Genomic Evolutionary Rate Profiling; M‐CAP, Mendelian Clinically Applicable Pathogenicity Score; SIFT: Sorting Intolerant From Tolerant.

Prediction of pathogenicity of PLPBP variants CADD, Combined Annotation Dependent Depletion; ExAC, Exome Aggregation Consortium; GERP, Genomic Evolutionary Rate Profiling; M‐CAP, Mendelian Clinically Applicable Pathogenicity Score; SIFT: Sorting Intolerant From Tolerant.

Discussion

Up to now, 14 variants in PLPBP have been reported in 15 patients from 13 families, including our patients.6, 9 In this study, WES revealed 4 types of PLPBP variants in 4 unrelated patients, including 3 novel variants. One of the 4 patients had compound heterozygous variants in PLPBP, and the others had homozygous variants. All patients in this study had missense variants in PLPBP, and in silico studies suggest that all variants are highly likely pathogenic. Although functional study of each variant has not been performed, the PLPBP variants are considered to be causative of the clinical symptoms in each patient. There are no apparent hot spots for the PLPBP variant, but a variant in c.122G>A (p.Arg41Gln) was seen in 2 Japanese patients, and c.260C>T (p.Pro87Leu) and c.614G>A (p.Arg205Gln) variants were found recurrently in 2 unrelated patients with different ethnic backgrounds.6, 9 Of interest, 4 homozygous variants, namely c.122G>A, c.206A>G, c.260C>T, and c.614G>A, have been identified in nonconsanguineous Japanese, Italian, Arabic, and Malaysian families, respectively. Although c.122G>A and c.206A>G are not registered in 1,000 genome and ExAC databases, 2 carriers of c.260C>T and c.614G>A are registered in ExAC in the European (non‐Finnish) population (N = 66,694) and the European (non‐Finnish) and South Asian population (N = 16,464), respectively. Each variant seems to be rare among individuals of a specific ethnicity, but it is important to notify the pathogenicity of these variants for genetic counseling. Neonatal seizure is the most characteristic symptom of vitamin B6–dependent epilepsy, in particular, of PLP‐dependent epilepsy caused by PNPO mutations.12 Ten of 11 patients with PLPBP variants begin to have seizures within the first 10 days of life; only one patient, who had a milder phenotype, presented with the first seizure at 1 month of age.6, 9 Two of 4patients in the present study had their first seizures after 1 month of age and lost the chance to receive vitamin B6 therapy until after the accomplishment of genetic diagnosis. Although the timing of the first administration of vitamin B6 differs among patients, the severity of the EEG, such as suppression‐burst, appears to be correlated with the severity of neurologic comorbidities rather than with the period until starting vitamin B6. Basura et al.13 reported that 30% of patients with pyridoxine‐dependent epilepsy presented with seizures after the neonatal period, and a delay in diagnosis and pyridoxine treatment was not uncommon. Vitamin B6 should be considered as one of the treatments for postneonatal epilepsy as well as neonatal epilepsy. Patients with PLPBP variants, as well as patients with other pyridoxine‐dependent epilepsies, have various types of seizures, including generalized and focal seizures. As for generalized seizures in patients with PLPBP variants, generalized tonic–clonic convulsions and myoclonic seizures are commonly seen, whereas absence or atonic seizures have not been reported. This difference may be related to the onset of seizures within 3 months of age in patients with PLPBP aberrations, because absence and atonic seizures usually occur after 1 year of age. As for focal seizures, seizures with impaired awareness showing lip‐smacking or grimacing and eye deviation were seen in 8 of 15 patients, as well as in patients with other pyridoxine‐dependent epilepsies.6, 9, 14 Of interest, no patients with PLPBP variants had epileptic spasms, which are often seen in other pyridoxine‐dependent epilepsies and other inherited metabolic epilepsies caused by deficiencies of thiamin, folate acid, and biotin. PLPBP is supposed to be involved in intracellular homeostatic regulation of PLP. Cultured fibroblasts with biallelic PLPBP variants show excessive accumulation of PLP, in contrast to other PLP‐dependent epilepsies.6 It is notable that PLP or pyridoxine is effective in 10–30% of cases of West syndrome, which is characterized by epileptic spasms.15 The pathologic mechanisms by which the PLPBP variants influence the type of seizures remain to be elucidated. Patients with pyridoxine‐dependent epilepsy show various EEG findings before proper treatment.16 Our patients also showed a variety of EEG findings, including suppression‐burst in one patient. In previous reports, 6 of 11 patients with PLPBP variants showed suppression‐burst, and 5 of them began to have seizures within the first 24 h of life.6, 9 Suppression‐burst on EEG is characteristic of neonatal‐onset, age‐dependent epileptic encephalopathy, particularly of Ohtahara syndrome or early myoclonic encephalopathy. Both show refractory seizures and have a poor neurologic prognosis. However, as far as pyridoxine‐dependent epilepsy is concerned, suppression‐burst does not necessarily mean a poor prognosis. Plecko et al.9 reported a patient with suppression‐burst in the neonatal period who had almost normal development except for a learning disability. Darin et al.6 reported that PLP is more effective than pyridoxine in controlling seizures in some patients with PLPBP variants. On the other hand, Plecko et al.9 reported that 3 of 4 patients had good seizure control with pyridoxine and showed normal intelligence. In this study, pyridoxine was used in 3 patients and PLP in one patient who displayed a better outcome than the other patients. PLP is only the active coenzyme form of vitamin B6, whereas pyridoxine requires conversion to PLP to serve as a coenzyme. Although the stability of PLP in solution is lower than that of pyridoxine, the phosphatic forms of vitamin B6, including PLP, protect them from hydrolysis, and PLP is primarily stored in the body rather than pyridoxine. The cost of pyridoxin is the same or less than that of PLP, depending on the country. In Japan, the price of 30 mg of pyridoxine and PLP is similar, that is, 5.6 yen (0.051 USD or 0.043 Euro). Adverse events associated with pyridoxine and PLP are less frequent compared with those of conventional antiepileptic drugs; however, serious respiratory arrest following injection in neonates with pyridoxine‐dependent epilepsy and rhabdomyolysis, diarrhea, vomiting, and an elevation of liver transaminase with high‐dose therapy, as well as peripheral neuropathy after long‐term use have been observed. It is still debatable which vitamer is more effective for treating seizures and improving the outcome of patients with PLPBP variants. In conclusion, PLPBP variants should be regarded as among the causative genes of developmental and epileptic encephalopathy, even when it occurs after the neonatal period. Early diagnosis and proper treatment with pyridoxine or PLP is essential to improve the neurologic prognosis in neonates or young children with poorly controlled seizures.

Disclosure

None of the authors has any conflict of interest to disclose. We confirm that we have read the Journal's position on issues involved in ethical publication and affirm that this report is consistent with those guidelines. Appendix S1. Case reports. Click here for additional data file. Figure S1. Interictal electroencephalography findings in patients 1 and 3. Figure S2. Magnetic resonance imaging findings in patient 2 at 6 years (a), patient 3 at 2 years (b), and patient 4 at 9 months (c) of age. Click here for additional data file.
  16 in total

Review 1.  High-dose vitamin B(6) treatment in West syndrome.

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Journal:  Brain Dev       Date:  2001-11       Impact factor: 1.961

2.  PARS2 and NARS2 mutations in infantile-onset neurodegenerative disorder.

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Journal:  J Hum Genet       Date:  2017-01-12       Impact factor: 3.172

3.  ILAE classification of the epilepsies: Position paper of the ILAE Commission for Classification and Terminology.

Authors:  Ingrid E Scheffer; Samuel Berkovic; Giuseppe Capovilla; Mary B Connolly; Jacqueline French; Laura Guilhoto; Edouard Hirsch; Satish Jain; Gary W Mathern; Solomon L Moshé; Douglas R Nordli; Emilio Perucca; Torbjörn Tomson; Samuel Wiebe; Yue-Hua Zhang; Sameer M Zuberi
Journal:  Epilepsia       Date:  2017-03-08       Impact factor: 5.864

4.  Seizures and paroxysmal events: symptoms pointing to the diagnosis of pyridoxine-dependent epilepsy and pyridoxine phosphate oxidase deficiency.

Authors:  Bernhard Schmitt; Matthias Baumgartner; Philippa B Mills; Peter T Clayton; Cornelis Jakobs; Elmar Keller; Gabriele Wohlrab
Journal:  Dev Med Child Neurol       Date:  2010-03-29       Impact factor: 5.449

5.  Mutations in PROSC Disrupt Cellular Pyridoxal Phosphate Homeostasis and Cause Vitamin-B6-Dependent Epilepsy.

Authors:  Niklas Darin; Emma Reid; Laurence Prunetti; Lena Samuelsson; Ralf A Husain; Matthew Wilson; Basma El Yacoubi; Emma Footitt; W K Chong; Louise C Wilson; Helen Prunty; Simon Pope; Simon Heales; Karine Lascelles; Mike Champion; Evangeline Wassmer; Pierangelo Veggiotti; Valérie de Crécy-Lagard; Philippa B Mills; Peter T Clayton
Journal:  Am J Hum Genet       Date:  2016-12-01       Impact factor: 11.025

6.  Confirmation of mutations in PROSC as a novel cause of vitamin B 6 -dependent epilepsy.

Authors:  Barbara Plecko; Markus Zweier; Anaïs Begemann; Deborah Mathis; Bernhard Schmitt; Pasquale Striano; Martina Baethmann; Maria Stella Vari; Francesca Beccaria; Federico Zara; Lisa M Crowther; Pascal Joset; Heinrich Sticht; Sorina Mihaela Papuc; Anita Rauch
Journal:  J Med Genet       Date:  2017-04-08       Impact factor: 6.318

7.  An atypical case of SPG56/CYP2U1-related spastic paraplegia presenting with delayed myelination.

Authors:  Gaku Minase; Satoko Miyatake; Shin Nabatame; Hiroshi Arai; Eriko Koshimizu; Takeshi Mizuguchi; Mitsuko Nakashima; Noriko Miyake; Hirotomo Saitsu; Toshinobu Miyamoto; Kazuo Sengoku; Naomichi Matsumoto
Journal:  J Hum Genet       Date:  2017-07-20       Impact factor: 3.172

8.  Clinical features and the management of pyridoxine-dependent and pyridoxine-responsive seizures: review of 63 North American cases submitted to a patient registry.

Authors:  Gregory J Basura; Shawn P Hagland; Anna M Wiltse; Sidney M Gospe
Journal:  Eur J Pediatr       Date:  2008-09-02       Impact factor: 3.183

Review 9.  Treatable newborn and infant seizures due to inborn errors of metabolism.

Authors:  Jaume Campistol; Barbara Plecko
Journal:  Epileptic Disord       Date:  2015-09       Impact factor: 1.819

10.  Analysis of protein-coding genetic variation in 60,706 humans.

Authors:  Monkol Lek; Konrad J Karczewski; Eric V Minikel; Kaitlin E Samocha; Eric Banks; Timothy Fennell; Anne H O'Donnell-Luria; James S Ware; Andrew J Hill; Beryl B Cummings; Taru Tukiainen; Daniel P Birnbaum; Jack A Kosmicki; Laramie E Duncan; Karol Estrada; Fengmei Zhao; James Zou; Emma Pierce-Hoffman; Joanne Berghout; David N Cooper; Nicole Deflaux; Mark DePristo; Ron Do; Jason Flannick; Menachem Fromer; Laura Gauthier; Jackie Goldstein; Namrata Gupta; Daniel Howrigan; Adam Kiezun; Mitja I Kurki; Ami Levy Moonshine; Pradeep Natarajan; Lorena Orozco; Gina M Peloso; Ryan Poplin; Manuel A Rivas; Valentin Ruano-Rubio; Samuel A Rose; Douglas M Ruderfer; Khalid Shakir; Peter D Stenson; Christine Stevens; Brett P Thomas; Grace Tiao; Maria T Tusie-Luna; Ben Weisburd; Hong-Hee Won; Dongmei Yu; David M Altshuler; Diego Ardissino; Michael Boehnke; John Danesh; Stacey Donnelly; Roberto Elosua; Jose C Florez; Stacey B Gabriel; Gad Getz; Stephen J Glatt; Christina M Hultman; Sekar Kathiresan; Markku Laakso; Steven McCarroll; Mark I McCarthy; Dermot McGovern; Ruth McPherson; Benjamin M Neale; Aarno Palotie; Shaun M Purcell; Danish Saleheen; Jeremiah M Scharf; Pamela Sklar; Patrick F Sullivan; Jaakko Tuomilehto; Ming T Tsuang; Hugh C Watkins; James G Wilson; Mark J Daly; Daniel G MacArthur
Journal:  Nature       Date:  2016-08-18       Impact factor: 49.962

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  10 in total

1.  Excessive Seizure Clusters in an Otherwise Well-Controlled Epilepsy as a Possible Hallmark of Untreated Vitamin B6-Responsive Epilepsy due to a Homozygous PLPBP Missense Variant.

Authors:  Jessika Johannsen; Tatjana Bierhals; Philipp Deindl; Laura Hecher; Katharina Hermann; Maja Hempel; Katja Kloth; Jonas Denecke
Journal:  J Pediatr Genet       Date:  2019-04-20

2.  Loss of YggS (COG0325) impacts aspartate metabolism in Salmonella enterica.

Authors:  Huong N Vu; Diana M Downs
Journal:  Mol Microbiol       Date:  2021-09-22       Impact factor: 3.979

3.  Pyridoxal and α-Ketoglutarate Independently Improve Function of Saccharomyces cerevisiae Thi5 in the Metabolic Network of Salmonella enterica.

Authors:  Michael D Paxhia; Diana M Downs
Journal:  J Bacteriol       Date:  2021-10-18       Impact factor: 3.476

4.  Mechanism of Pyridoxine 5'-Phosphate Accumulation in Pyridoxal 5'-Phosphate-Binding Protein Deficiency.

Authors:  Tomokazu Ito; Honoka Ogawa; Hisashi Hemmi; Diana M Downs; Tohru Yoshimura
Journal:  J Bacteriol       Date:  2022-01-03       Impact factor: 3.476

5.  Inhibition of glycine cleavage system by pyridoxine 5'-phosphate causes synthetic lethality in glyA yggS and serA yggS in Escherichia coli.

Authors:  Tomokazu Ito; Ran Hori; Hisashi Hemmi; Diana M Downs; Tohru Yoshimura
Journal:  Mol Microbiol       Date:  2019-11-24       Impact factor: 3.501

6.  Early-onset vitamin B6-dependent epilepsy due to pathogenic PLPBP variants in a premature infant: A case report and review of the literature.

Authors:  Oliver Heath; James Pitt; Simone Mandelstam; Carl Kuschel; Anand Vasudevan; Sarah Donoghue
Journal:  JIMD Rep       Date:  2020-11-15

7.  Vitamin B6-dependent epilepsy due to pyridoxal phosphate-binding protein (PLPBP) defect - First case report from Pakistan and review of literature.

Authors:  Sibtain Ahmed; Ralph J DeBerardinis; Min Ni; Bushra Afroze
Journal:  Ann Med Surg (Lond)       Date:  2020-12-01

8.  A founder mutation in the PLPBP gene in families from Saguenay-Lac-St-Jean region affected by a pyridoxine-dependent epilepsy.

Authors:  Maitou Pal; Baiba Lace; Yvan Labrie; Nathalie Laflamme; Nadie Rioux; Samarth Thonta Setty; Marc-Andre Dugas; Louise Gosselin; Arnaud Droit; Nicolas Chrestian; Serge Rivest
Journal:  JIMD Rep       Date:  2021-02-23

9.  Diagnostic pitfalls in vitamin B6-dependent epilepsy caused by mutations in the PLPBP gene.

Authors:  Kristian Vestergaard Jensen; Maria Frid; Tommy Stödberg; Michela Barbaro; Anna Wedell; Mette Christensen; Mads Bak; Jakob Ek; Camilla Gøbel Madsen; Niklas Darin; Sabine Grønborg
Journal:  JIMD Rep       Date:  2019-09-30

10.  Biochemical and Proteomic Studies of Human Pyridoxal 5'-Phosphate-Binding Protein (PLPBP).

Authors:  Anja Fux; Stephan A Sieber
Journal:  ACS Chem Biol       Date:  2019-12-26       Impact factor: 4.634

  10 in total

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