Literature DB >> 30518699

Circulating microRNA biomarkers for metastatic disease in neuroblastoma patients.

Fjoralba Zeka1,2, Anneleen Decock1,2, Alan Van Goethem1,2, Katrien Vanderheyden1,2, Fleur Demuynck1, Tim Lammens2,3, Hetty H Helsmoortel1,2, Joëlle Vermeulen4, Rosa Noguera5, Ana P Berbegall5,6, Valérie Combaret7, Gudrun Schleiermacher8, Geneviève Laureys2,3, Alexander Schramm9, Johannes H Schulte9,10,11, Sven Rahmann12, Julie Bienertová-Vašků13, Pavel Mazánek13, Marta Jeison14, Shifra Ash14, Michael D Hogarty15, Mirthala Moreno-Smith16, Eveline Barbieri16, Jason Shohet16, Frank Berthold17, Tom Van Maerken1,2, Frank Speleman1,2, Matthias Fischer17,18, Katleen De Preter1,2, Pieter Mestdagh1,2, Jo Vandesompele1,2.   

Abstract

In this study, the circulating miRNome from diagnostic neuroblastoma serum was assessed for identification of noninvasive biomarkers with potential in monitoring metastatic disease. After determining the circulating neuroblastoma miRNome, 743 miRNAs were screened in 2 independent cohorts of 131 and 54 patients. Evaluation of serum miRNA variance in a model testing for tumor stage, MYCN status, age at diagnosis, and overall survival revealed tumor stage as the most significant factor impacting miRNA abundance in neuroblastoma serum. Differential abundance analysis between patients with metastatic and localized disease revealed 9 miRNAs strongly associated with metastatic stage 4 disease in both patient cohorts. Increasing levels of these miRNAs were also observed in serum from xenografted mice bearing human neuroblastoma tumors. Moreover, murine serum miRNA levels were strongly associated with tumor volume. These findings were validated in longitudinal serum samples from metastatic neuroblastoma patients, where the 9 miRNAs were associated with disease burden and treatment response.

Entities:  

Keywords:  Genetics; Noncoding RNAs; Oncology

Mesh:

Substances:

Year:  2018        PMID: 30518699      PMCID: PMC6328024          DOI: 10.1172/jci.insight.97021

Source DB:  PubMed          Journal:  JCI Insight        ISSN: 2379-3708


  18 in total

1.  miRNA expression profiling: from reference genes to global mean normalization.

Authors:  Barbara D'haene; Pieter Mestdagh; Jan Hellemans; Jo Vandesompele
Journal:  Methods Mol Biol       Date:  2012

2.  Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study.

Authors:  Pieter Mestdagh; Nicole Hartmann; Lukas Baeriswyl; Ditte Andreasen; Nathalie Bernard; Caifu Chen; David Cheo; Petula D'Andrade; Mike DeMayo; Lucas Dennis; Stefaan Derveaux; Yun Feng; Stephanie Fulmer-Smentek; Bernhard Gerstmayer; Julia Gouffon; Chris Grimley; Eric Lader; Kathy Y Lee; Shujun Luo; Peter Mouritzen; Aishwarya Narayanan; Sunali Patel; Sabine Peiffer; Silvia Rüberg; Gary Schroth; Dave Schuster; Jonathan M Shaffer; Elliot J Shelton; Scott Silveria; Umberto Ulmanella; Vamsi Veeramachaneni; Frank Staedtler; Thomas Peters; Toumy Guettouche; Linda Wong; Jo Vandesompele
Journal:  Nat Methods       Date:  2014-06-29       Impact factor: 28.547

3.  Minimal residual disease monitoring in neuroblastoma patients based on the expression of a set of real-time RT-PCR markers in tumor-initiating cells.

Authors:  Tri Budi Hartomo; Aiko Kozaki; Daiichiro Hasegawa; Thi Van Huyen Pham; Nobuyuki Yamamoto; Atsuro Saitoh; Toshiaki Ishida; Keiichiro Kawasaki; Yoshiyuki Kosaka; Hiroki Ohashi; Tomoto Yamamoto; Satoru Morikawa; Satoshi Hirase; Ikuko Kubokawa; Takeshi Mori; Tomoko Yanai; Akira Hayakawa; Yasuhiro Takeshima; Kazumoto Iijima; Masafumi Matsuo; Hisahide Nishio; Noriyuki Nishimura
Journal:  Oncol Rep       Date:  2013-02-12       Impact factor: 3.906

4.  Genomic Copy Number Profiling Using Circulating Free Tumor DNA Highlights Heterogeneity in Neuroblastoma.

Authors:  Mathieu Chicard; Sandrine Boyault; Leo Colmet Daage; Wilfrid Richer; David Gentien; Gaelle Pierron; Eve Lapouble; Angela Bellini; Nathalie Clement; Isabelle Iacono; Stéphanie Bréjon; Marjorie Carrere; Cécile Reyes; Toby Hocking; Virginie Bernard; Michel Peuchmaur; Nadège Corradini; Cécile Faure-Conter; Carole Coze; Dominique Plantaz; Anne Sophie Defachelles; Estelle Thebaud; Marion Gambart; Frédéric Millot; Dominique Valteau-Couanet; Jean Michon; Alain Puisieux; Olivier Delattre; Valérie Combaret; Gudrun Schleiermacher
Journal:  Clin Cancer Res       Date:  2016-07-20       Impact factor: 12.531

Review 5.  Neuroblastoma: developmental biology, cancer genomics and immunotherapy.

Authors:  Nai-Kong V Cheung; Michael A Dyer
Journal:  Nat Rev Cancer       Date:  2013-06       Impact factor: 60.716

6.  Circulating MYCN DNA as a tumor-specific marker in neuroblastoma patients.

Authors:  Valérie Combaret; Carole Audoynaud; Isabelle Iacono; Marie-Christine Favrot; Matthias Schell; Christophe Bergeron; Alain Puisieux
Journal:  Cancer Res       Date:  2002-07-01       Impact factor: 12.701

7.  Solid tumors of childhood display specific serum microRNA profiles.

Authors:  Matthew J Murray; Katie L Raby; Harpreet K Saini; Shivani Bailey; Sophie V Wool; Jane M Tunnacliffe; Anton J Enright; James C Nicholson; Nicholas Coleman
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-11-21       Impact factor: 4.254

8.  Serum-circulating miRNAs predict neuroblastoma progression in mouse model of high-risk metastatic disease.

Authors:  Satish Kumar Ramraj; Sheeja Aravindan; Dinesh Babu Somasundaram; Terence S Herman; Mohan Natarajan; Natarajan Aravindan
Journal:  Oncotarget       Date:  2016-04-05

9.  High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA.

Authors:  Pieter Mestdagh; Tom Feys; Nathalie Bernard; Simone Guenther; Caifu Chen; Frank Speleman; Jo Vandesompele
Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971

10.  Transmembrane adaptor protein PAG1 is a novel tumor suppressor in neuroblastoma.

Authors:  Saurabh Agarwal; Rajib Ghosh; Zaowen Chen; Anna Lakoma; Preethi H Gunaratne; Eugene S Kim; Jason M Shohet
Journal:  Oncotarget       Date:  2016-04-26
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  7 in total

1.  5-Hydroxymethylcytosine Profiles in Circulating Cell-Free DNA Associate with Disease Burden in Children with Neuroblastoma.

Authors:  Mark A Applebaum; Erin K Barr; Jason Karpus; Diana C West-Szymanski; Meritxell Oliva; Elizabeth A Sokol; Sheng Zhang; Zhou Zhang; Wei Zhang; Alexandre Chlenski; Helen R Salwen; Emma Wilkinson; Marija Dobratic; Robert L Grossman; Lucy A Godley; Barbara E Stranger; Chuan He; Susan L Cohn
Journal:  Clin Cancer Res       Date:  2019-12-18       Impact factor: 12.531

Review 2.  Recent clinical research on the application of liquid biopsy in neuroblastoma.

Authors:  Si-Yang Liu; Fei-Qiu Wen
Journal:  Zhongguo Dang Dai Er Ke Za Zhi       Date:  2022-03-15

3.  Prevalence of germline variants in consensus moderate-to-high-risk predisposition genes to hereditary breast and ovarian cancer in BRCA1/2-negative Brazilian patients.

Authors:  Renan Gomes; Pricila da Silva Spinola; Ayslan Castro Brant; Bruna Palma Matta; Caroline Macedo Nascimento; Silvia Maria de Aquino Paes; Cibele Rodrigues Bonvicino; Anna Claudia Evangelista Dos Santos; Miguel Angelo Martins Moreira
Journal:  Breast Cancer Res Treat       Date:  2020-10-30       Impact factor: 4.872

Review 4.  Opportunities and challenges of circulating biomarkers in neuroblastoma.

Authors:  Ricky M Trigg; Jacqui A Shaw; Suzanne D Turner
Journal:  Open Biol       Date:  2019-05-31       Impact factor: 6.411

5.  Exosomal microRNAs from Longitudinal Liquid Biopsies for the Prediction of Response to Induction Chemotherapy in High-Risk Neuroblastoma Patients: A Proof of Concept SIOPEN Study.

Authors:  Martina Morini; Davide Cangelosi; Daniela Segalerba; Danilo Marimpietri; Federica Raggi; Aurora Castellano; Doriana Fruci; Jaime Font de Mora; Adela Cañete; Yania Yáñez; Virginie Viprey; Maria Valeria Corrias; Barbara Carlini; Annalisa Pezzolo; Gudrun Schleiermacher; Katia Mazzocco; Ruth Ladenstein; Angela Rita Sementa; Massimo Conte; Alberto Garaventa; Susan Burchill; Roberto Luksch; Maria Carla Bosco; Alessandra Eva; Luigi Varesio
Journal:  Cancers (Basel)       Date:  2019-09-30       Impact factor: 6.639

6.  Potential Role of miRNAs in the Acquisition of Chemoresistance in Neuroblastoma.

Authors:  Barbara Marengo; Alessandra Pulliero; Maria Valeria Corrias; Riccardo Leardi; Emanuele Farinini; Gilberto Fronza; Paola Menichini; Paola Monti; Lorenzo Monteleone; Giulia Elda Valenti; Andrea Speciale; Patrizia Perri; Francesca Madia; Alberto Izzotti; Cinzia Domenicotti
Journal:  J Pers Med       Date:  2021-02-07

7.  Bioinformatics Analysis of Neuroblastoma miRNA Based on GEO Data.

Authors:  Jiandong Shi; Piaoyan Zhang; Huarong Su; Lingyi Cai; Liang Zhao; Haixia Zhou
Journal:  Pharmgenomics Pers Med       Date:  2021-07-13
  7 in total

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