Literature DB >> 30518666

Adding the Team into T1 Translational Research: A Case Study of Multidisciplinary Team Science in the Evaluation of Biomarkers of Prostate Cancer Risk and Prognosis.

Michael T Marrone1, Corinne E Joshu2,3, Sarah B Peskoe2, Angelo M De Marzo4,5,3, Christopher M Heaphy4,3, Shawn E Lupold5,3, Alan K Meeker4,5,3, Elizabeth A Platz2,5,3.   

Abstract

BACKGROUND: Given translational research challenges, multidisciplinary team science is promoted to increase the likelihood of moving from discovery to health effect. We present a case study documenting the utility of multidisciplinary team science in prostate cancer tissue biomarker validation.
METHODS: We used primary data generated by a team consisting of a pathologist, cancer biologists, a biostatistician, and epidemiologists. We examined their contributions by phase of biomarker evaluation to identify when, through the practice of team science, threats to internal validity were recognized and solved. Next, we quantified the extent of bias avoided in evaluating the association of Ki67 (immunohistochemistry), stromal cell telomere length (fluorescence in situ hybridization), and microRNA (miRNA) (miR-21, miR-141, miR-221; quantitative RT-PCR) with prostate cancer risk or recurrence in nested case-control studies.
RESULTS: Threats to validity were tissue storage time (Ki67, miRNA) and laboratory equipment maintenance (telomeres). Solutions were all in the data analysis phase and involved using tissue storage-time specific cutpoints and/or batch-specific cutpoints. Bias in the regression coefficient for quantiles of each biomarker ranged from 24% to 423%, and the coefficient for the test for trend ranged from 15% to 910%. The interpretation of the associations changed as follows: Ki67, null to positive; stromal cell telomere length, null to positive; miR-21 and miR-141 remained null; miR-221, weak to moderate inverse.
CONCLUSIONS: In this case study, we documented the inferential benefits of multidisciplinary team science when the team's collaboration and coordination led to the identification of threats to validity and the implementation of appropriate solutions.
© 2018 American Association for Clinical Chemistry.

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Year:  2018        PMID: 30518666      PMCID: PMC7375195          DOI: 10.1373/clinchem.2018.293365

Source DB:  PubMed          Journal:  Clin Chem        ISSN: 0009-9147            Impact factor:   8.327


  31 in total

Review 1.  Phases of biomarker development for early detection of cancer.

Authors:  M S Pepe; R Etzioni; Z Feng; J D Potter; M L Thompson; M Thornquist; M Winget; Y Yasui
Journal:  J Natl Cancer Inst       Date:  2001-07-18       Impact factor: 13.506

2.  Reflections on success in multidisciplinary, translational science: working together to answer the right questions.

Authors:  Elizabeth A Platz
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-01-21       Impact factor: 4.254

Review 3.  Roadmap for developing and validating therapeutically relevant genomic classifiers.

Authors:  Richard Simon
Journal:  J Clin Oncol       Date:  2005-09-06       Impact factor: 44.544

Review 4.  Long-term biochemical disease-free and cancer-specific survival following anatomic radical retropubic prostatectomy. The 15-year Johns Hopkins experience.

Authors:  M Han; A W Partin; C R Pound; J I Epstein; P C Walsh
Journal:  Urol Clin North Am       Date:  2001-08       Impact factor: 2.241

5.  Increased gene copy number of ERG on chromosome 21 but not TMPRSS2-ERG fusion predicts outcome in prostatic adenocarcinomas.

Authors:  Antoun Toubaji; Roula Albadine; Alan K Meeker; William B Isaacs; Tamara Lotan; Michael C Haffner; Alcides Chaux; Jonathan I Epstein; Misop Han; Patrick C Walsh; Alan W Partin; Angelo M De Marzo; Elizabeth A Platz; George J Netto
Journal:  Mod Pathol       Date:  2011-07-08       Impact factor: 7.842

6.  Loss of PTEN expression is associated with increased risk of recurrence after prostatectomy for clinically localized prostate cancer.

Authors:  Alcides Chaux; Sarah B Peskoe; Nilda Gonzalez-Roibon; Luciana Schultz; Roula Albadine; Jessica Hicks; Angelo M De Marzo; Elizabeth A Platz; George J Netto
Journal:  Mod Pathol       Date:  2012-06-08       Impact factor: 7.842

Review 7.  Tackling the widespread and critical impact of batch effects in high-throughput data.

Authors:  Jeffrey T Leek; Robert B Scharpf; Héctor Corrada Bravo; David Simcha; Benjamin Langmead; W Evan Johnson; Donald Geman; Keith Baggerly; Rafael A Irizarry
Journal:  Nat Rev Genet       Date:  2010-09-14       Impact factor: 53.242

8.  Weight gain is associated with an increased risk of prostate cancer recurrence after prostatectomy in the PSA era.

Authors:  Corinne E Joshu; Alison M Mondul; Andy Menke; Cari Meinhold; Misop Han; Elizabeth B Humphreys; Stephen J Freedland; Patrick C Walsh; Elizabeth A Platz
Journal:  Cancer Prev Res (Phila)       Date:  2011-02-16

9.  The influence of finasteride on the development of prostate cancer.

Authors:  Ian M Thompson; Phyllis J Goodman; Catherine M Tangen; M Scott Lucia; Gary J Miller; Leslie G Ford; Michael M Lieber; R Duane Cespedes; James N Atkins; Scott M Lippman; Susie M Carlin; Anne Ryan; Connie M Szczepanek; John J Crowley; Charles A Coltman
Journal:  N Engl J Med       Date:  2003-06-24       Impact factor: 91.245

10.  Differential long-term stability of microRNAs and RNU6B snRNA in 12-20 year old archived formalin-fixed paraffin-embedded specimens.

Authors:  Sarah B Peskoe; John R Barber; Qizhi Zheng; Alan K Meeker; Angelo M De Marzo; Elizabeth A Platz; Shawn E Lupold
Journal:  BMC Cancer       Date:  2017-01-06       Impact factor: 4.430

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  2 in total

1.  Extent, impact, and mitigation of batch effects in tumor biomarker studies using tissue microarrays.

Authors:  Konrad H Stopsack; Svitlana Tyekucheva; Molin Wang; Travis A Gerke; J Bailey Vaselkiv; Kathryn L Penney; Philip W Kantoff; Stephen P Finn; Michelangelo Fiorentino; Massimo Loda; Tamara L Lotan; Giovanni Parmigiani; Lorelei A Mucci
Journal:  Elife       Date:  2021-12-23       Impact factor: 8.140

2.  Multiplex Immunofluorescence in Formalin-Fixed Paraffin-Embedded Tumor Tissue to Identify Single-Cell-Level PI3K Pathway Activation.

Authors:  Konrad H Stopsack; Ying Huang; Svitlana Tyekucheva; Travis A Gerke; Clyde Bango; Habiba Elfandy; Michaela Bowden; Kathryn L Penney; Thomas M Roberts; Giovanni Parmigiani; Philip W Kantoff; Lorelei A Mucci; Massimo Loda
Journal:  Clin Cancer Res       Date:  2020-09-10       Impact factor: 12.531

  2 in total

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