| Literature DB >> 30513785 |
Angelika A Adamus-Grabicka1, Magdalena Markowicz-Piasecka2, Michał B Ponczek3, Joachim Kusz4, Magdalena Małecka5, Urszula Krajewska6, Elzbieta Budzisz7.
Abstract
The aim of this study was to determine the cytotoxic effect of 3-arylidenechromanone (1) and 3arylideneflavanone (2) on HL-60 and NALM-6 cell lines (two human leukemia cell lines) and a WM-115 melanoma cell line. Both compounds exhibited high cytotoxic activity with higher cytotoxicity exerted by compound 2, for which IC50 values below 10 µM were found for each cell line. For compound 1, the IC50 values were higher than 10 µM for HL-60 and WM-115 cell lines, but IC50 < 10 µM was found for the NALM-6 cell line. Both compounds, at the concentrations close to IC50 (concentration range: 5⁻24 µM/L for compound 1 and 6⁻10 µM/L for compound 2), are not toxic towards red blood cells. The synthesized compounds were characterized using spectroscopic methods ¹H- and 13C-NMR, IR, MS, elemental analysis, and X-ray diffraction. The lipophilicity of both synthesized compounds was determined using an RP-TLC method and the logP values found were compared with the theoretical ones taken from the Molinspiration Cheminformatics (miLogP) software package. The mode of binding of both compounds to human serum albumin was assessed using molecular docking methods.Entities:
Keywords: benzoflavanone/chromanone derivatives; crystal structure; cytotoxic effect; erythrotoxicity; synthesis
Mesh:
Substances:
Year: 2018 PMID: 30513785 PMCID: PMC6321038 DOI: 10.3390/molecules23123172
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Synthesis of compounds 1 and 2 (when R = H or Ph).
Figure 1Molecular structures of 1 and 2, with atom-numbering schemes. The anisotropic displacement parameters are shown at the 30% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius.
Figure 2Chains and layer of (1) supported by C-H…O hydrogen bonds (A) that build a 3-D network of hydrogen bonds (B) and view of equivalent molecules linked by hydrogen bonds (top right).
Hydrogen-bonding geometries (in Å, °) for structure 1.
| D-H | H---A | D---A | D-H---A | |
|---|---|---|---|---|
| C11-H11---O2 | 0.93 | 2.35 | 2.768 (2) | 107 |
| C61-H61---O52 | 0.93 | 2.45 | 2.811 (2) | 103 |
| C8-H8…O2 i | 0.93 | 2.63 | 3.198 (2) | 120 |
| C67-H67---O51 i | 0.93 | 2.59 | 3.409 (2) | 147 |
| C52-H52A…O51 ii | 0.97 | 2.60 | 3.274 (2) | 126 |
| C56-H56…O2 iii | 0.93 | 2.70 | 3.498 (2) | 144 |
| C2-H2B…Cg3 iv | 0.97 | 2.87 | 3.717 (2) | 147 |
| C16-H16…Cg7 v | 0.93 | 2.90 | 3.726 (2) | 148 |
| C21-H21C…Cg2 iv | 0.96 | 2.95 | 3.712 (2) | 137 |
| C59-H59…Cg7 ii | 0.93 | 2.71 | 3.545 (2) | 150 |
| C69-H69B…Cg6 vi | 0.96 | 2.93 | 3.645 (2) | 132 |
Symmetry codes: (i): −1+x,y,z; (ii): 1 − x, 1 − y, 1 − z, (iii): x, 1+y, z (iv): 1 − x, 1 − y, −z, (v) 1 + x, y, z, (vi): - x, 1 − y, 1 − z Cg2, Cg3, Cg6, Cg7− centroids of C5/C6/C7/C8/C9/C10, C12/C13/C14/C15/C16/C17, C55/C56/C57/C58/C59/C60, and C62/C63/C64/C65/C66/C67 rings.
Figure 3Partial molecular packing of 2 showing hydrogen-bonded dimers generated by C-H…O interaction.
Hydrogen-bonding geometries (in Å, °) for structure 2.
| 9 | D-H | H---A | D---A | D-H---A |
|---|---|---|---|---|
| C11-H11---O2 | 0.97 | 2.39 | 2.811 (2) | 105 |
| C16-H16---O2i | 0.93 | 2.64 | 3.271 (2) | 126 |
| C7-H7…Cg4ii | 0.93 | 2.55 | 3.475 (2) | 172 |
| C14-H14…Cg2iii | 0.93 | 2.84 | 3.619 (2) | 142 |
Symmetry codes: (i) 1 − x,1 − y, −z; (ii): ½ + x, ½ − y, −½ + z, (iii): −½ + x, ½ − y, ½ + z, Cg2, and Cg4 are centroids of C5/C6/C7/C8/C9/C10 C22/C23/C24/C25/C26/C27 rings.
The cytotoxic activity of ()-3-(4-N,N-diethylaminobenzylidene)chroman-4-one (1) and ()-3-(4-N,N-diethylamino)benzylidene)-2-phenylchroman-4-one (2) against cancer HL-60, NALM-6, and WM-115. The results are presented as IC50 values in µM range.
| Compounds | IC50 (µM) | ||
|---|---|---|---|
| HL-60 | NALM-6 | WM-115 | |
|
| 11.76 ± 1.97 | 8.69 ± 0.40 | 18.09 ± 3.14 |
|
| 8.36 ± 0.63 | 9.08 ± 0.30 | 6.45 ± 0.69 |
| 4-chromanone | 676.7 ± 32.6 | 673.7 ± 22.5 | >1000 |
| 3-benzylideneflavanone [ | 33.3 ± 3.0 | 29.5 ± 4.7 | 59.4 ± 0.9 |
Figure 4The effects of compound 1 and 2 on the integrity of the erythrocyte membrane. The results are presented as the percentage of hemolysis obtained from the interaction of studied compounds with 2% red blood cells (RBCs) suspension, compared to the positive control Triton X-100 at 0.2% (100% hemolysis) (mean ± SD; n = 4), * p < 0.05 vs. control.
Figure 5The microscope images of erythrocytes treated with compounds 1 and 2. 2% erythrocyte suspension was treated at 37 °C for 60 min with indicated concentrations of compound 1 and 2. Representative phase-contrast images are shown (magnification of 400 times). Black arrows indicate echinocytes.
Figure 6Tenfold blind docking of derivative 1 and 2 to HSA. Ribbon-stick models present the docking of derivatives (sticks) I-A, C and II-B, D to 1E7I human albumin structure (ribbon) with binding affinity energy (ΔG°) −7.5 ± 0.2 and −9.1 ± 0.1 (kcal/mol ± SD), respectively. C, D are the zoom of IB FA1 binding site area, distances marked by yellow dashed lines.
Molinspiration bioactivity score and drug likeliness. H.A., the number of heavy atoms, n, number of binding sites, and LE, Ligand Efficiency (−ΔG°/H.A.), LELP (logP/LE).
| Compound | Bioactivity Score | H.A. | n | ΔG° Bind (kcal/mol) | Log | miLog | LE | LELP |
|---|---|---|---|---|---|---|---|---|
|
| GPCR ligand −0.15 | 23 | 4 | −7.5 | 3.43 | 4.47 | 0.33 | 13.55 |
|
| GPCR ligand −0.04 | 29 | 1 | −9.1 | 5.69 | 6.05 | 0.31 | 19.52 |
Crystal data, data collection, and refinement parameters of 1 and 2.
| 1 | 2 | |
|---|---|---|
|
| ||
| Chemical formula | C20H21NO2 | C26H25NO2 |
| 307.38 | 383.47 | |
| Cell setting, space group | Triclinic, | Monoclinic, |
| 7.732(2),13.998(2), 16.312(2) | 11.764(2), 13.455(2), 12.832(2) | |
| 64.74(2), 87.07(2), 87.58(2) | 90.0, 93.75(2), 90.0 | |
|
| 1594.1(2) | 2026.8(2) |
| Z | 4 | 4 |
| 1.376 | 1.257 | |
| Temperature (K) | 100 | 100 |
| Radiation type (Å) | 0.71073 | 0.71073 |
| μ (mm−1) | 0.082 | 0.079 |
| Crystal form, colour | prism, colourless | block, orange |
| Crystal size (mm) | 0.3 × 0.2 × 0.18 | 0.3 × 0.2 × 0.18 |
|
| ||
| Diffractometer | SuperNova, Atlas detector | SuperNova, Atlas detector |
| No. of measured and unique reflections | 13098, 6603 | 25887, 4193 |
| Observed data with | 5664 | 3316 |
|
| 0.0265 | 0.0305 |
| θmax (°) | 26.49 | 26.49 |
| Overall completeness to θmax [%] | 99.8 | 99.8 |
|
| ||
| Refinement on |
|
|
| All data | 6603 | 4193 |
| 0.0362, 0.0941 | 0.0513, 0.1347 | |
| 0.0434, 0.0989 | 0.0686, 0.1453 | |
| Goodness of fit | 1.067 | 1.066 |
| No. of parameters | 419 | 268 |
| 0.249, −0.212 | 0.241, −0.265 |