Literature DB >> 30505712

Approach to evaluating tumor mutational burden in routine clinical practice.

John Truesdell1, Vincent A Miller1, David Fabrizio1.   

Abstract

Immune checkpoint inhibition with monoclonal antibodies has emerged as a promising therapeutic approach but in most tumor types responses are unpredictable and observed in a minority of treated patients. Positive and negative predictive biomarkers for efficacy of these costly drugs are desperately needed. Immunohistochemistry (IHC) for programmed death ligand (PD-L1) expression in tumor and inflammatory infiltrate has emerged as one predictive biomarker of some value. However, multiple confounders including those inherent to any IHC and the unique complexities of the biology of the immune response have limited its utility. Tumor mutational burden (TMB) has emerged as a seemingly more promising predictive biomarker for immunotherapy with checkpoint inhibitors in several tumor types and is likely to be incorporated into future treatment algorithms for these agents. Given this, the need to define and standardize key parameters of the most promising biomarkers becomes essential to allow all stakeholders to make meaningful observations and inferences as to the efficacy of ostensibly similar agents and combinations in various settings. This review briefly summarizes approaches to measurement of TMB and ongoing efforts to achieve harmonization of this key biomarker.

Entities:  

Keywords:  Tumor mutational burden (TMB); comprehensive genomic profiling (CGP); non-small cell lung cancer (NSCLC)

Year:  2018        PMID: 30505712      PMCID: PMC6249621          DOI: 10.21037/tlcr.2018.10.10

Source DB:  PubMed          Journal:  Transl Lung Cancer Res        ISSN: 2218-6751


  16 in total

1.  Nivolumab plus Ipilimumab in Lung Cancer with a High Tumor Mutational Burden.

Authors:  Matthew D Hellmann; Tudor-Eliade Ciuleanu; Adam Pluzanski; Jong Seok Lee; Gregory A Otterson; Clarisse Audigier-Valette; Elisa Minenza; Helena Linardou; Sjaak Burgers; Pamela Salman; Hossein Borghaei; Suresh S Ramalingam; Julie Brahmer; Martin Reck; Kenneth J O'Byrne; William J Geese; George Green; Han Chang; Joseph Szustakowski; Prabhu Bhagavatheeswaran; Diane Healey; Yali Fu; Faith Nathan; Luis Paz-Ares
Journal:  N Engl J Med       Date:  2018-04-16       Impact factor: 91.245

2.  Nivolumab in patients with metastatic DNA mismatch repair-deficient or microsatellite instability-high colorectal cancer (CheckMate 142): an open-label, multicentre, phase 2 study.

Authors:  Michael J Overman; Ray McDermott; Joseph L Leach; Sara Lonardi; Heinz-Josef Lenz; Michael A Morse; Jayesh Desai; Andrew Hill; Michael Axelson; Rebecca A Moss; Monica V Goldberg; Z Alexander Cao; Jean-Marie Ledeine; Gregory A Maglinte; Scott Kopetz; Thierry André
Journal:  Lancet Oncol       Date:  2017-07-19       Impact factor: 41.316

3.  Mismatch repair deficiency predicts response of solid tumors to PD-1 blockade.

Authors:  Dung T Le; Jennifer N Durham; Kellie N Smith; Hao Wang; Bjarne R Bartlett; Laveet K Aulakh; Steve Lu; Holly Kemberling; Cara Wilt; Brandon S Luber; Fay Wong; Nilofer S Azad; Agnieszka A Rucki; Dan Laheru; Ross Donehower; Atif Zaheer; George A Fisher; Todd S Crocenzi; James J Lee; Tim F Greten; Austin G Duffy; Kristen K Ciombor; Aleksandra D Eyring; Bao H Lam; Andrew Joe; S Peter Kang; Matthias Holdhoff; Ludmila Danilova; Leslie Cope; Christian Meyer; Shibin Zhou; Richard M Goldberg; Deborah K Armstrong; Katherine M Bever; Amanda N Fader; Janis Taube; Franck Housseau; David Spetzler; Nianqing Xiao; Drew M Pardoll; Nickolas Papadopoulos; Kenneth W Kinzler; James R Eshleman; Bert Vogelstein; Robert A Anders; Luis A Diaz
Journal:  Science       Date:  2017-06-08       Impact factor: 47.728

4.  Cost-Effectiveness of Immune Checkpoint Inhibition in BRAF Wild-Type Advanced Melanoma.

Authors:  Christine G Kohn; Simon B Zeichner; Qiushi Chen; Alberto J Montero; Daniel A Goldstein; Christopher R Flowers
Journal:  J Clin Oncol       Date:  2017-02-21       Impact factor: 44.544

5.  Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer.

Authors:  Naiyer A Rizvi; Matthew D Hellmann; Alexandra Snyder; Pia Kvistborg; Vladimir Makarov; Jonathan J Havel; William Lee; Jianda Yuan; Phillip Wong; Teresa S Ho; Martin L Miller; Natasha Rekhtman; Andre L Moreira; Fawzia Ibrahim; Cameron Bruggeman; Billel Gasmi; Roberta Zappasodi; Yuka Maeda; Chris Sander; Edward B Garon; Taha Merghoub; Jedd D Wolchok; Ton N Schumacher; Timothy A Chan
Journal:  Science       Date:  2015-03-12       Impact factor: 47.728

6.  Atezolizumab in patients with locally advanced and metastatic urothelial carcinoma who have progressed following treatment with platinum-based chemotherapy: a single-arm, multicentre, phase 2 trial.

Authors:  Jonathan E Rosenberg; Jean Hoffman-Censits; Tom Powles; Michiel S van der Heijden; Arjun V Balar; Andrea Necchi; Nancy Dawson; Peter H O'Donnell; Ani Balmanoukian; Yohann Loriot; Sandy Srinivas; Margitta M Retz; Petros Grivas; Richard W Joseph; Matthew D Galsky; Mark T Fleming; Daniel P Petrylak; Jose Luis Perez-Gracia; Howard A Burris; Daniel Castellano; Christina Canil; Joaquim Bellmunt; Dean Bajorin; Dorothee Nickles; Richard Bourgon; Garrett M Frampton; Na Cui; Sanjeev Mariathasan; Oyewale Abidoye; Gregg D Fine; Robert Dreicer
Journal:  Lancet       Date:  2016-03-04       Impact factor: 79.321

7.  Blood-based tumor mutational burden as a predictor of clinical benefit in non-small-cell lung cancer patients treated with atezolizumab.

Authors:  David R Gandara; Sarah M Paul; Marcin Kowanetz; Erica Schleifman; Wei Zou; Yan Li; Achim Rittmeyer; Louis Fehrenbacher; Geoff Otto; Christine Malboeuf; Daniel S Lieber; Doron Lipson; Jacob Silterra; Lukas Amler; Todd Riehl; Craig A Cummings; Priti S Hegde; Alan Sandler; Marcus Ballinger; David Fabrizio; Tony Mok; David S Shames
Journal:  Nat Med       Date:  2018-08-06       Impact factor: 53.440

8.  Comprehensive Analysis of Hypermutation in Human Cancer.

Authors:  Brittany B Campbell; Nicholas Light; David Fabrizio; Matthew Zatzman; Fabio Fuligni; Richard de Borja; Scott Davidson; Melissa Edwards; Julia A Elvin; Karl P Hodel; Walter J Zahurancik; Zucai Suo; Tatiana Lipman; Katharina Wimmer; Christian P Kratz; Daniel C Bowers; Theodore W Laetsch; Gavin P Dunn; Tanner M Johanns; Matthew R Grimmer; Ivan V Smirnov; Valérie Larouche; David Samuel; Annika Bronsema; Michael Osborn; Duncan Stearns; Pichai Raman; Kristina A Cole; Phillip B Storm; Michal Yalon; Enrico Opocher; Gary Mason; Gregory A Thomas; Magnus Sabel; Ben George; David S Ziegler; Scott Lindhorst; Vanan Magimairajan Issai; Shlomi Constantini; Helen Toledano; Ronit Elhasid; Roula Farah; Rina Dvir; Peter Dirks; Annie Huang; Melissa A Galati; Jiil Chung; Vijay Ramaswamy; Meredith S Irwin; Melyssa Aronson; Carol Durno; Michael D Taylor; Gideon Rechavi; John M Maris; Eric Bouffet; Cynthia Hawkins; Joseph F Costello; M Stephen Meyn; Zachary F Pursell; David Malkin; Uri Tabori; Adam Shlien
Journal:  Cell       Date:  2017-10-19       Impact factor: 41.582

9.  Beyond microsatellite testing: assessment of tumor mutational burden identifies subsets of colorectal cancer who may respond to immune checkpoint inhibition.

Authors:  David A Fabrizio; Thomas J George; Richard F Dunne; Garrett Frampton; James Sun; Kyle Gowen; Mark Kennedy; Joel Greenbowe; Alexa B Schrock; Aram F Hezel; Jeffrey S Ross; Phillip J Stephens; Siraj M Ali; Vincent A Miller; Marwan Fakih; Samuel J Klempner
Journal:  J Gastrointest Oncol       Date:  2018-08

10.  Analysis of 100,000 human cancer genomes reveals the landscape of tumor mutational burden.

Authors:  Zachary R Chalmers; Caitlin F Connelly; David Fabrizio; Laurie Gay; Siraj M Ali; Riley Ennis; Alexa Schrock; Brittany Campbell; Adam Shlien; Juliann Chmielecki; Franklin Huang; Yuting He; James Sun; Uri Tabori; Mark Kennedy; Daniel S Lieber; Steven Roels; Jared White; Geoffrey A Otto; Jeffrey S Ross; Levi Garraway; Vincent A Miller; Phillip J Stephens; Garrett M Frampton
Journal:  Genome Med       Date:  2017-04-19       Impact factor: 11.117

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  12 in total

1.  Targeted next-generation sequencing to assess tumor mutation burden: ready for prime-time in non-small cell lung cancer?

Authors:  Pascale Tomasini; Laurent Greillier
Journal:  Transl Lung Cancer Res       Date:  2019-12

2.  Tumor mutation score is more powerful than tumor mutation burden in predicting response to immunotherapy in non-small cell lung cancer.

Authors:  Yuan Li; Zuhua Chen; Weiping Tao; Nan Sun; Jie He
Journal:  Cancer Immunol Immunother       Date:  2021-02-03       Impact factor: 6.968

Review 3.  Liquid Biopsies to Evaluate Immunogenicity of Gynecological/Breast Tumors: On the Way to Blood-Based Biomarkers for Immunotherapies.

Authors:  Corinna Keup; Rainer Kimmig; Sabine Kasimir-Bauer
Journal:  Breast Care (Basel)       Date:  2020-10-07       Impact factor: 2.860

4.  Recurrent somatic mutations as predictors of immunotherapy response.

Authors:  Zoran Z Gajic; Aditya Deshpande; Mateusz Legut; Marcin Imieliński; Neville E Sanjana
Journal:  Nat Commun       Date:  2022-07-08       Impact factor: 17.694

5.  Tumor Mutational Burden, Toxicity, and Response of Immune Checkpoint Inhibitors Targeting PD(L)1, CTLA-4, and Combination: A Meta-regression Analysis.

Authors:  Arsen Osipov; Su Jin Lim; Aleksandra Popovic; Nilofer S Azad; Daniel A Laheru; Lei Zheng; Elizabeth M Jaffee; Hao Wang; Mark Yarchoan
Journal:  Clin Cancer Res       Date:  2020-06-25       Impact factor: 12.531

6.  Tumor mutational burden assessment in non-small-cell lung cancer samples: results from the TMB2 harmonization project comparing three NGS panels.

Authors:  Eva M Garrido-Martin; Luis Paz-Ares; Javier Ramos-Paradas; Susana Hernández-Prieto; David Lora; Elena Sanchez; Aranzazu Rosado; Tamara Caniego-Casas; Nuria Carrizo; Ana Belén Enguita; María Teresa Muñoz-Jimenez; Borja Rodriguez; Urbicio Perez-Gonzalez; David Gómez-Sánchez; Irene Ferrer; Santiago Ponce Aix; Ángel Nuñez Buiza; Pilar Garrido; José Palacios; Fernando Lopez-Rios
Journal:  J Immunother Cancer       Date:  2021-05       Impact factor: 13.751

7.  Identifying predictors of HPV-related head and neck squamous cell carcinoma progression and survival through patient-derived models.

Authors:  Nicole D Facompre; Pavithra Rajagopalan; Varun Sahu; Alexander T Pearson; Kathleen T Montone; Claire D James; Frederico O Gleber-Netto; Gregory S Weinstein; Jalal Jalaly; Alexander Lin; Anil K Rustgi; Hiroshi Nakagawa; Joseph A Califano; Curtis R Pickering; Elizabeth A White; Bradford E Windle; Iain M Morgan; Roger B Cohen; Phyllis A Gimotty; Devraj Basu
Journal:  Int J Cancer       Date:  2020-07-06       Impact factor: 7.396

8.  The interplay between cancer type, panel size and tumor mutational burden threshold in patient selection for cancer immunotherapy.

Authors:  Mahdi Golkaram; Chen Zhao; Kristina Kruglyak; Shile Zhang; Sven Bilke
Journal:  PLoS Comput Biol       Date:  2020-11-09       Impact factor: 4.475

9.  Influence of low tumor content on tumor mutational burden estimation by whole-exome sequencing and targeted panel sequencing.

Authors:  Wenxin Zhang; Ruixia Wang; Huan Fang; Xiangyuan Ma; Dan Li; Tao Liu; Zhenxi Chen; Ke Wang; Shiguang Hao; Zicheng Yu; Zhili Chang; Chenglong Na; Yin Wang; Jian Bai; Yanyan Zhang; Fang Chen; Miao Li; Chao Chen; Liangshen Wei; Jinghua Li; Xiaoyan Chang; Shoufang Qu; Ling Yang; Jie Huang
Journal:  Clin Transl Med       Date:  2021-05

10.  Novel tumor mutation score versus tumor mutation burden in predicting survival after immunotherapy in pan-cancer patients from the MSK-IMPACT cohort.

Authors:  Yuan Li; Zuhua Chen; Long Wu; Weiping Tao
Journal:  Ann Transl Med       Date:  2020-04
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