Literature DB >> 30503570

Inferring Compensatory Evolution of cis- and trans-Regulatory Variation.

Xinwen Zhang1, J J Emerson2.   

Abstract

Entities:  

Mesh：

Year:  2018        PMID： 30503570      PMCID： PMC8244802          DOI： 10.1016/j.tig.2018.11.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


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  9 in total

1.  The genetic basis of evolutionary change in gene expression levels.

Authors:  J J Emerson; Wen-Hsiung Li
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2.  Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution.

Authors:  Sean B Carroll
Journal:  Cell       Date:  2008-07-11       Impact factor: 41.582

3.  Natural selection on cis and trans regulation in yeasts.

Authors:  J J Emerson; Li-Ching Hsieh; Huang-Mo Sung; Tzi-Yuan Wang; Chih-Jen Huang; Henry Horng-Shing Lu; Mei-Yeh Jade Lu; Shu-Hsing Wu; Wen-Hsiung Li
Journal:  Genome Res       Date:  2010-05-05       Impact factor: 9.043

4.  Regulatory divergence in Drosophila revealed by mRNA-seq.

Authors:  C Joel McManus; Joseph D Coolon; Michael O Duff; Jodi Eipper-Mains; Brenton R Graveley; Patricia J Wittkopp
Journal:  Genome Res       Date:  2010-03-30       Impact factor: 9.043

Review 5.  Transcriptional regulation and its misregulation in disease.

Authors:  Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

6.  Regulatory changes underlying expression differences within and between Drosophila species.

Authors:  Patricia J Wittkopp; Belinda K Haerum; Andrew G Clark
Journal:  Nat Genet       Date:  2008-02-17       Impact factor: 38.330

7.  Evolutionary changes in cis and trans gene regulation.

Authors:  Patricia J Wittkopp; Belinda K Haerum; Andrew G Clark
Journal:  Nature       Date:  2004-07-01       Impact factor: 49.962

8.  Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.

Authors:  Marek Gierliński; Christian Cole; Pietà Schofield; Nicholas J Schurch; Alexander Sherstnev; Vijender Singh; Nicola Wrobel; Karim Gharbi; Gordon Simpson; Tom Owen-Hughes; Mark Blaxter; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2015-07-23       Impact factor: 6.937

9.  Transcriptome and genome sequencing uncovers functional variation in humans.

Authors:  Tuuli Lappalainen; Michael Sammeth; Marc R Friedländer; Peter A C 't Hoen; Jean Monlong; Manuel A Rivas; Mar Gonzàlez-Porta; Natalja Kurbatova; Thasso Griebel; Pedro G Ferreira; Matthias Barann; Thomas Wieland; Liliana Greger; Maarten van Iterson; Jonas Almlöf; Paolo Ribeca; Irina Pulyakhina; Daniela Esser; Thomas Giger; Andrew Tikhonov; Marc Sultan; Gabrielle Bertier; Daniel G MacArthur; Monkol Lek; Esther Lizano; Henk P J Buermans; Ismael Padioleau; Thomas Schwarzmayr; Olof Karlberg; Halit Ongen; Helena Kilpinen; Sergi Beltran; Marta Gut; Katja Kahlem; Vyacheslav Amstislavskiy; Oliver Stegle; Matti Pirinen; Stephen B Montgomery; Peter Donnelly; Mark I McCarthy; Paul Flicek; Tim M Strom; Hans Lehrach; Stefan Schreiber; Ralf Sudbrak; Angel Carracedo; Stylianos E Antonarakis; Robert Häsler; Ann-Christine Syvänen; Gert-Jan van Ommen; Alvis Brazma; Thomas Meitinger; Philip Rosenstiel; Roderic Guigó; Ivo G Gut; Xavier Estivill; Emmanouil T Dermitzakis
Journal:  Nature       Date:  2013-09-15       Impact factor: 49.962
  9 in total
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1.  Transcriptional regulatory divergence underpinning species-specific learned vocalization in songbirds.

Authors:  Hongdi Wang; Azusa Sawai; Noriyuki Toji; Rintaro Sugioka; Yukino Shibata; Yuika Suzuki; Yu Ji; Shin Hayase; Satoru Akama; Jun Sese; Kazuhiro Wada
Journal:  PLoS Biol       Date:  2019-11-13       Impact factor: 8.029

2.  Hybrid Incompatibilities and Transgressive Gene Expression Between Two Closely Related Subspecies of Drosophila.

Authors:  Alwyn C Go; Alberto Civetta
Journal:  Front Genet       Date:  2020-12-10       Impact factor: 4.599

3.  The mode of expression divergence in Drosophila fat body is infection-specific.

Authors:  Bryan A Ramirez-Corona; Stephanie Fruth; Oluchi Ofoegbu; Zeba Wunderlich
Journal:  Genome Res       Date:  2021-04-15       Impact factor: 9.043

4.  Cross-kingdom transcriptomic trends in the evolution of hybrid gene expression.

Authors:  Anna H Behling; David J Winter; Austen R D Ganley; Murray P Cox
Journal:  J Evol Biol       Date:  2022-07-13       Impact factor: 2.516

5.  Molecular variation in a functionally divergent homolog of FCA regulates flowering time in Arabidopsis thaliana.

Authors:  Yunhe Wang; Zhen Tao; Wanyi Wang; Daniele Filiault; Chunhong Qiu; Chuanhong Wang; Hui Wang; Shamsur Rehman; Jian Shi; Yan Zhang; Peijin Li
Journal:  Nat Commun       Date:  2020-11-17       Impact factor: 14.919

6.  Contributions of cis- and trans-Regulatory Evolution to Transcriptomic Divergence across Populations in the Drosophila mojavensis Larval Brain.

Authors:  Kyle M Benowitz; Joshua M Coleman; Carson W Allan; Luciano M Matzkin
Journal:  Genome Biol Evol       Date:  2020-08-01       Impact factor: 3.416

7.  Parallel and population-specific gene regulatory evolution in cold-adapted fly populations.

Authors:  Yuheng Huang; Justin B Lack; Grant T Hoppel; John E Pool
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  7 in total

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