Literature DB >> 30484625

Extender Unit Promiscuity and Orthogonal Protein Interactions of an Aminomalonyl-ACP Utilizing Trans-Acyltransferase from Zwittermicin Biosynthesis.

Samantha M Carpenter1, Gavin J Williams1,2.   

Abstract

Trans-acting acyltransferases (trans-ATs) are standalone enzymes that select and deliver extender units to polyketide synthase assembly lines. Accordingly, there is interest in leveraging trans-ATs as tools to regioselectively diversify polyketide structures. Yet, little is known regarding the extender unit and acyl carrier protein (ACP) specificity of trans-ATs, particularly those that utilize unusual ACP-linked extender units. For example, the biosynthesis of the antibiotic zwittermicin involves the trans-AT ZmaF, which is responsible for installing a rare ACP-linked aminomalonyl extender unit. Here, we developed a method to access a panel of non-natural and non-native ACP-linked extender units and used it to probe the promiscuity of ZmaF, revealing one of the most promiscuous ATs characterized to date. Furthermore, we demonstrated that ZmaF is highly orthogonal with respect to its ACP specificity, and the ability of ZmaF to trans-complement noncognate PKS modules was also explored. Together, these results set the stage for further engineering ZmaF as a tool for polyketide diversification.

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Year:  2018        PMID: 30484625      PMCID: PMC6470042          DOI: 10.1021/acschembio.8b00867

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  45 in total

1.  Enhancing the modularity of the modular polyketide synthases: transacylation in modular polyketide synthases catalyzed by malonyl-CoA:ACP transacylase.

Authors:  Pawan Kumar; Andrew T Koppisch; David E Cane; Chaitan Khosla
Journal:  J Am Chem Soc       Date:  2003-11-26       Impact factor: 15.419

2.  ClusPro: a fully automated algorithm for protein-protein docking.

Authors:  Stephen R Comeau; David W Gatchell; Sandor Vajda; Carlos J Camacho
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

3.  Mutant malonyl-CoA synthetases with altered specificity for polyketide synthase extender unit generation.

Authors:  Irina Koryakina; Gavin J Williams
Journal:  Chembiochem       Date:  2011-10-17       Impact factor: 3.164

4.  I-TASSER: a unified platform for automated protein structure and function prediction.

Authors:  Ambrish Roy; Alper Kucukural; Yang Zhang
Journal:  Nat Protoc       Date:  2010-03-25       Impact factor: 13.491

5.  Recognition of (2S)-aminomalonyl-acyl carrier protein (ACP) and (2R)-hydroxymalonyl-ACP by acyltransferases in zwittermicin A biosynthesis.

Authors:  Yolande A Chan; Michael G Thomas
Journal:  Biochemistry       Date:  2010-05-04       Impact factor: 3.162

6.  Structure and mechanism of the trans-acting acyltransferase from the disorazole synthase.

Authors:  Fong T Wong; Xi Jin; Irimpan I Mathews; David E Cane; Chaitan Khosla
Journal:  Biochemistry       Date:  2011-07-05       Impact factor: 3.162

7.  Combining Promiscuous Acyl-CoA Oxidase and Enoyl-CoA Carboxylase/Reductases for Atypical Polyketide Extender Unit Biosynthesis.

Authors:  Bastian Vögeli; Kyra Geyer; Patrick D Gerlinger; Sarah Benkstein; Niña Socorro Cortina; Tobias J Erb
Journal:  Cell Chem Biol       Date:  2018-05-03       Impact factor: 8.116

8.  Molecular insights into the biosynthesis of guadinomine: a type III secretion system inhibitor.

Authors:  Tracy C Holmes; Aaron E May; Kathia Zaleta-Rivera; J Graham Ruby; Peter Skewes-Cox; Michael A Fischbach; Joseph L DeRisi; Masato Iwatsuki; Satoshi Ōmura; Chaitan Khosla
Journal:  J Am Chem Soc       Date:  2012-10-10       Impact factor: 15.419

9.  Substrate Flexibility of a Mutated Acyltransferase Domain and Implications for Polyketide Biosynthesis.

Authors:  Kenny Bravo-Rodriguez; Stephan Klopries; Kyra R M Koopmans; Uschi Sundermann; Samir Yahiaoui; Julia Arens; Susanna Kushnir; Frank Schulz; Elsa Sanchez-Garcia
Journal:  Chem Biol       Date:  2015-10-29

10.  Comparative analysis of the substrate specificity of trans- versus cis-acyltransferases of assembly line polyketide synthases.

Authors:  Briana J Dunn; Katharine R Watts; Thomas Robbins; David E Cane; Chaitan Khosla
Journal:  Biochemistry       Date:  2014-06-09       Impact factor: 3.162

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  3 in total

Review 1.  Synthetic biology enabling access to designer polyketides.

Authors:  Alexandra A Malico; Lindsay Nichols; Gavin J Williams
Journal:  Curr Opin Chem Biol       Date:  2020-08-04       Impact factor: 8.822

Review 2.  Engineering actinomycetes for biosynthesis of macrolactone polyketides.

Authors:  Dipesh Dhakal; Jae Kyung Sohng; Ramesh Prasad Pandey
Journal:  Microb Cell Fact       Date:  2019-08-13       Impact factor: 5.328

3.  Computationally-guided exchange of substrate selectivity motifs in a modular polyketide synthase acyltransferase.

Authors:  Edward Kalkreuter; Kyle S Bingham; Aaron M Keeler; Andrew N Lowell; Jennifer J Schmidt; David H Sherman; Gavin J Williams
Journal:  Nat Commun       Date:  2021-04-13       Impact factor: 14.919

  3 in total

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