Literature DB >> 30478097

Next-Generation Sequencing Technologies.

W Richard McCombie1, John D McPherson2, Elaine R Mardis3.   

Abstract

Although DNA and RNA sequencing has a history spanning five decades, large-scale massively parallel sequencing, or next-generation sequencing (NGS), has only been commercially available for about 10 years. Nonetheless, the meteoric increase in sequencing throughput with NGS has dramatically changed our understanding of our genome and ourselves. Sequencing the first human genome as a haploid reference took nearly 10 years but now a full diploid human genome sequence can be accomplished in just a few days. NGS has also reduced the cost of generating sequence data and a plethora of sequence-based methods for probing a genome have emerged using NGS as the readout and have been applied to many species. NGS methods have also entered the medical realm and will see an increasing use in diagnosis and treatment. NGS has largely been driven by short-read generation (150 bp) but new platforms have emerged and are now capable of generating long multikilobase reads. These latter platforms enable reference-independent genome assemblies and long-range haplotype generation. Rapid DNA and RNA sequencing is now mainstream and will continue to have an increasing impact on biology and medicine.
Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved.

Entities:  

Year:  2019        PMID: 30478097     DOI: 10.1101/cshperspect.a036798

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Med        ISSN: 2157-1422            Impact factor:   6.915


  20 in total

1.  Uncovering pseudogenes and intergenic protein-coding sequences in TriTryps' genomes.

Authors:  Mayla Abrahim; Edson Machado; Fernando Alvarez-Valín; Antonio Basílio de Miranda; Marcos Catanho
Journal:  Genome Biol Evol       Date:  2022-10-08       Impact factor: 4.065

2.  Development of a versatile high-throughput mutagenesis assay with multiplexed short-read NGS using DNA-barcoded supF shuttle vector library amplified in E. coli.

Authors:  Hidehiko Kawai; Ren Iwata; Shungo Ebi; Ryusei Sugihara; Shogo Masuda; Chiho Fujiwara; Shingo Kimura; Hiroyuki Kamiya
Journal:  Elife       Date:  2022-10-10       Impact factor: 8.713

Review 3.  MET-dependent solid tumours - molecular diagnosis and targeted therapy.

Authors:  Robin Guo; Jia Luo; Jason Chang; Natasha Rekhtman; Maria Arcila; Alexander Drilon
Journal:  Nat Rev Clin Oncol       Date:  2020-06-08       Impact factor: 66.675

4.  Next-generation sequencing for constitutional variants in the clinical laboratory, 2021 revision: a technical standard of the American College of Medical Genetics and Genomics (ACMG).

Authors:  Catherine Rehder; Lora J H Bean; David Bick; Elizabeth Chao; Wendy Chung; Soma Das; Julianne O'Daniel; Heidi Rehm; Vandana Shashi; Lisa M Vincent
Journal:  Genet Med       Date:  2021-04-29       Impact factor: 8.822

Review 5.  Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time.

Authors:  Mariana Lopes; Sandra Louzada; Margarida Gama-Carvalho; Raquel Chaves
Journal:  Int J Mol Sci       Date:  2021-04-29       Impact factor: 5.923

Review 6.  In-Cell Labeling and Mass Spectrometry for Systems-Level Structural Biology.

Authors:  Juan D Chavez; Helisa H Wippel; Xiaoting Tang; Andrew Keller; James E Bruce
Journal:  Chem Rev       Date:  2021-07-07       Impact factor: 72.087

Review 7.  The contribution of single-cell analysis of acute leukemia in the therapeutic strategy.

Authors:  Lamia Madaci; Julien Colle; Geoffroy Venton; Laure Farnault; Béatrice Loriod; Régis Costello
Journal:  Biomark Res       Date:  2021-06-27

Review 8.  Developmental constraints on fin diversity.

Authors:  Alyssa Enny; Kathleen Flaherty; Shunsuke Mori; Natalie Turner; Tetsuya Nakamura
Journal:  Dev Growth Differ       Date:  2020-06-01       Impact factor: 2.053

Review 9.  Programmed DNA Damage and Physiological DSBs: Mapping, Biological Significance and Perturbations in Disease States.

Authors:  Sara Oster; Rami I Aqeilan
Journal:  Cells       Date:  2020-08-10       Impact factor: 6.600

Review 10.  Building better polymerases: Engineering the replication of expanded genetic alphabets.

Authors:  Zahra Ouaray; Steven A Benner; Millie M Georgiadis; Nigel G J Richards
Journal:  J Biol Chem       Date:  2020-10-01       Impact factor: 5.157

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