Literature DB >> 30472989

Greasing the Wheels of Lipid Biology with Chemical Tools.

Timothy W Bumpus1, Jeremy M Baskin2.   

Abstract

Biological lipids are a structurally diverse and historically vexing group of hydrophobic metabolites. Here, we review recent advances in chemical imaging techniques that reveal changes in lipid biosynthesis, metabolism, dynamics, and interactions. We highlight tools for tagging many lipid classes via metabolic incorporation of bioorthogonally functionalized precursors, detectable via click chemistry, and photocaged, photoswitchable, and photocrosslinkable variants of different lipids. Certain lipid probes can supplant traditional protein-based markers of organelle membranes in super-resolution microscopy, and emerging vibrational imaging methods, such as stimulated Raman spectroscopy (SRS), enable simultaneous imaging of more than a dozen different types of target molecule, including lipids. Collectively, these chemical imaging techniques will illuminate, in living color, previously hidden aspects of lipid biology.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  bioorthogonal,; click chemistry; imaging; lipids; metabolic labeling

Mesh:

Substances:

Year:  2018        PMID: 30472989      PMCID: PMC6632076          DOI: 10.1016/j.tibs.2018.09.011

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  15 in total

1.  Fitness Factors for Bioorthogonal Chemical Probes.

Authors:  Yulin Tian; Qing Lin
Journal:  ACS Chem Biol       Date:  2019-12-05       Impact factor: 5.100

2.  Getting a Grip on Greasy Molecules.

Authors:  Timothy W Bumpus; Jeremy M Baskin
Journal:  Trends Biochem Sci       Date:  2019-04-23       Impact factor: 13.807

3.  A real-time, click chemistry imaging approach reveals stimulus-specific subcellular locations of phospholipase D activity.

Authors:  Dongjun Liang; Kane Wu; Reika Tei; Timothy W Bumpus; Johnny Ye; Jeremy M Baskin
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-16       Impact factor: 11.205

4.  Click chemistry-enabled CRISPR screening reveals GSK3 as a regulator of PLD signaling.

Authors:  Timothy W Bumpus; Shiying Huang; Reika Tei; Jeremy M Baskin
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-30       Impact factor: 11.205

5.  Manipulating complex chromatin folding via CRISPR-guided bioorthogonal chemistry.

Authors:  Geng Qin; Jie Yang; Chuanqi Zhao; Jinsong Ren; Xiaogang Qu
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-29       Impact factor: 12.779

Review 6.  Tracing Lipid Metabolism by Alkyne Lipids and Mass Spectrometry: The State of the Art.

Authors:  Lars Kuerschner; Christoph Thiele
Journal:  Front Mol Biosci       Date:  2022-05-20

7.  Optical Control of Phosphoinositide Binding: Rapid Activation of Subcellular Protein Translocation and Cell Signaling.

Authors:  Amy Ryan; Gerald R V Hammond; Alexander Deiters
Journal:  ACS Synth Biol       Date:  2021-11-08       Impact factor: 5.249

8.  Fluorogenic Cyclopropenones for Multicomponent, Real-Time Imaging.

Authors:  Tyler K Heiss; Robert S Dorn; Andrew J Ferreira; Anna C Love; Jennifer A Prescher
Journal:  J Am Chem Soc       Date:  2022-04-20       Impact factor: 16.383

Review 9.  Lipids: chemical tools for their synthesis, modification, and analysis.

Authors:  Judith Flores; Brittany M White; Roberto J Brea; Jeremy M Baskin; Neal K Devaraj
Journal:  Chem Soc Rev       Date:  2020-07-21       Impact factor: 54.564

Review 10.  Metabolic labeling of glycerophospholipids via clickable analogs derivatized at the lipid headgroup.

Authors:  Christelle F Ancajas; Tanei J Ricks; Michael D Best
Journal:  Chem Phys Lipids       Date:  2020-09-06       Impact factor: 3.329

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