Literature DB >> 30465047

Adversarial Domain Adaptation for Classification of Prostate Histopathology Whole-Slide Images.

Jian Ren1, Ilker Hacihaliloglu2, Eric A Singer3, David J Foran3, Xin Qi3.   

Abstract

Automatic and accurate Gleason grading of histopathology tissue slides is crucial for prostate cancer diagnosis, treatment, and prognosis. Usually, histopathology tissue slides from different institutions show heterogeneous appearances because of different tissue preparation and staining procedures, thus the predictable model learned from one domain may not be applicable to a new domain directly. Here we propose to adopt unsupervised domain adaptation to transfer the discriminative knowledge obtained from the source domain to the target domain with-out requiring labeling of images at the target domain. The adaptation is achieved through adversarial training to find an invariant feature space along with the proposed Siamese architecture on the target domain to add a regularization that is appropriate for the whole-slide images. We validate the method on two prostate cancer datasets and obtain significant classification improvement of Gleason scores as compared with the baseline models.

Entities:  

Year:  2018        PMID: 30465047      PMCID: PMC6241308          DOI: 10.1007/978-3-030-00934-2_23

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  7 in total

Review 1.  Deep learning in neural networks: an overview.

Authors:  Jürgen Schmidhuber
Journal:  Neural Netw       Date:  2014-10-13

2.  Patch-based Convolutional Neural Network for Whole Slide Tissue Image Classification.

Authors:  Le Hou; Dimitris Samaras; Tahsin M Kurc; Yi Gao; James E Davis; Joel H Saltz
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2016 Jun-Jul

3.  Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012.

Authors:  Jacques Ferlay; Isabelle Soerjomataram; Rajesh Dikshit; Sultan Eser; Colin Mathers; Marise Rebelo; Donald Maxwell Parkin; David Forman; Freddie Bray
Journal:  Int J Cancer       Date:  2014-10-09       Impact factor: 7.396

4.  A Contemporary Prostate Cancer Grading System: A Validated Alternative to the Gleason Score.

Authors:  Jonathan I Epstein; Michael J Zelefsky; Daniel D Sjoberg; Joel B Nelson; Lars Egevad; Cristina Magi-Galluzzi; Andrew J Vickers; Anil V Parwani; Victor E Reuter; Samson W Fine; James A Eastham; Peter Wiklund; Misop Han; Chandana A Reddy; Jay P Ciezki; Tommy Nyberg; Eric A Klein
Journal:  Eur Urol       Date:  2015-07-10       Impact factor: 20.096

5.  The McNemar test for binary matched-pairs data: mid-p and asymptotic are better than exact conditional.

Authors:  Morten W Fagerland; Stian Lydersen; Petter Laake
Journal:  BMC Med Res Methodol       Date:  2013-07-13       Impact factor: 4.615

6.  Mutational landscape and significance across 12 major cancer types.

Authors:  Cyriac Kandoth; Michael D McLellan; Fabio Vandin; Kai Ye; Beifang Niu; Charles Lu; Mingchao Xie; Qunyuan Zhang; Joshua F McMichael; Matthew A Wyczalkowski; Mark D M Leiserson; Christopher A Miller; John S Welch; Matthew J Walter; Michael C Wendl; Timothy J Ley; Richard K Wilson; Benjamin J Raphael; Li Ding
Journal:  Nature       Date:  2013-10-17       Impact factor: 49.962

7.  Deep learning as a tool for increased accuracy and efficiency of histopathological diagnosis.

Authors:  Geert Litjens; Clara I Sánchez; Nadya Timofeeva; Meyke Hermsen; Iris Nagtegaal; Iringo Kovacs; Christina Hulsbergen-van de Kaa; Peter Bult; Bram van Ginneken; Jeroen van der Laak
Journal:  Sci Rep       Date:  2016-05-23       Impact factor: 4.379

  7 in total
  12 in total

1.  Generalizing Deep Learning for Medical Image Segmentation to Unseen Domains via Deep Stacked Transformation.

Authors:  Ling Zhang; Xiaosong Wang; Dong Yang; Thomas Sanford; Stephanie Harmon; Baris Turkbey; Bradford J Wood; Holger Roth; Andriy Myronenko; Daguang Xu; Ziyue Xu
Journal:  IEEE Trans Med Imaging       Date:  2020-02-12       Impact factor: 10.048

2.  Automatic Whole Slide Pathology Image Diagnosis Framework via Unit Stochastic Selection and Attention Fusion.

Authors:  Pingjun Chen; Yun Liang; Xiaoshuang Shi; Lin Yang; Paul Gader
Journal:  Neurocomputing       Date:  2021-01-23       Impact factor: 5.779

3.  Bidirectional Mapping-Based Domain Adaptation for Nucleus Detection in Cross-Modality Microscopy Images.

Authors:  Fuyong Xing; Toby C Cornish; Tellen D Bennett; Debashis Ghosh
Journal:  IEEE Trans Med Imaging       Date:  2021-09-30       Impact factor: 11.037

Review 4.  Domain Adaptation for Medical Image Analysis: A Survey.

Authors:  Hao Guan; Mingxia Liu
Journal:  IEEE Trans Biomed Eng       Date:  2022-02-18       Impact factor: 4.756

5.  Recurrence analysis on prostate cancer patients with Gleason score 7 using integrated histopathology whole-slide images and genomic data through deep neural networks.

Authors:  Jian Ren; Kubra Karagoz; Michael L Gatza; Eric A Singer; Evita Sadimin; David J Foran; Xin Qi
Journal:  J Med Imaging (Bellingham)       Date:  2018-11-15

6.  Unsupervised Domain Adaptation for Classification of Histopathology Whole-Slide Images.

Authors:  Jian Ren; Ilker Hacihaliloglu; Eric A Singer; David J Foran; Xin Qi
Journal:  Front Bioeng Biotechnol       Date:  2019-05-15

Review 7.  Advancing Medical Imaging Informatics by Deep Learning-Based Domain Adaptation.

Authors:  Anirudh Choudhary; Li Tong; Yuanda Zhu; May D Wang
Journal:  Yearb Med Inform       Date:  2020-08-21

8.  Semantic consistency generative adversarial network for cross-modality domain adaptation in ultrasound thyroid nodule classification.

Authors:  Jun Zhao; Xiaosong Zhou; Guohua Shi; Ning Xiao; Kai Song; Juanjuan Zhao; Rui Hao; Keqin Li
Journal:  Appl Intell (Dordr)       Date:  2022-01-13       Impact factor: 5.019

9.  A holistic overview of deep learning approach in medical imaging.

Authors:  Rammah Yousef; Gaurav Gupta; Nabhan Yousef; Manju Khari
Journal:  Multimed Syst       Date:  2022-01-21       Impact factor: 2.603

10.  Staining Invariant Features for Improving Generalization of Deep Convolutional Neural Networks in Computational Pathology.

Authors:  Sebastian Otálora; Manfredo Atzori; Vincent Andrearczyk; Amjad Khan; Henning Müller
Journal:  Front Bioeng Biotechnol       Date:  2019-08-23
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