Literature DB >> 30463943

Visualizing atomic sizes and molecular shapes with the classical turning surface of the Kohn-Sham potential.

Egor Ospadov1, Jianmin Tao2, Viktor N Staroverov1, John P Perdew3,4.   

Abstract

The Kohn-Sham potential [Formula: see text] is the effective multiplicative operator in a noninteracting Schrödinger equation that reproduces the ground-state density of a real (interacting) system. The sizes and shapes of atoms, molecules, and solids can be defined in terms of Kohn-Sham potentials in a nonarbitrary way that accords with chemical intuition and can be implemented efficiently, permitting a natural pictorial representation for chemistry and condensed-matter physics. Let [Formula: see text] be the maximum occupied orbital energy of the noninteracting electrons. Then the equation [Formula: see text] defines the surface at which classical electrons with energy [Formula: see text] would be turned back and thus determines the surface of any electronic object. Atomic and ionic radii defined in this manner agree well with empirical estimates, show regular chemical trends, and allow one to identify the type of chemical bonding between two given atoms by comparing the actual internuclear distance to the sum of atomic radii. The molecular surfaces can be fused (for a covalent bond), seamed (ionic bond), necked (hydrogen bond), or divided (van der Waals bond). This contribution extends the pioneering work of Z.-Z. Yang et al. [Yang ZZ, Davidson ER (1997) Int J Quantum Chem 62:47-53; Zhao DX, et al. (2018) Mol Phys 116:969-977] by our consideration of the Kohn-Sham potential, protomolecules, doubly negative atomic ions, a bond-type parameter, seamed and necked molecular surfaces, and a more extensive table of atomic and ionic radii that are fully consistent with expected periodic trends.

Entities:  

Keywords:  Kohn–Sham potential; atomic radius; chemical bonding; classical turning point; molecular surface

Year:  2018        PMID: 30463943      PMCID: PMC6294941          DOI: 10.1073/pnas.1814300115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

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Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

2.  Theorem for exact local exchange potential.

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Journal:  Phys Rev Lett       Date:  1990-08-20       Impact factor: 9.161

3.  Optimized effective potentials yielding Hartree-Fock energies and densities.

Authors:  Viktor N Staroverov; Gustavo E Scuseria; Ernest R Davidson
Journal:  J Chem Phys       Date:  2006-04-14       Impact factor: 3.488

4.  Spurious fractional charge on dissociated atoms: pervasive and resilient self-interaction error of common density functionals.

Authors:  Adrienn Ruzsinszky; John P Perdew; Gábor I Csonka; Oleg A Vydrov; Gustavo E Scuseria
Journal:  J Chem Phys       Date:  2006-11-21       Impact factor: 3.488

5.  Basis set exchange: a community database for computational sciences.

Authors:  Karen L Schuchardt; Brett T Didier; Todd Elsethagen; Lisong Sun; Vidhya Gurumoorthi; Jared Chase; Jun Li; Theresa L Windus
Journal:  J Chem Inf Model       Date:  2007-04-12       Impact factor: 4.956

6.  Accurate and efficient approximation to the optimized effective potential for exchange.

Authors:  Ilya G Ryabinkin; Alexei A Kananenka; Viktor N Staroverov
Journal:  Phys Rev Lett       Date:  2013-07-01       Impact factor: 9.161

7.  How to tell when a model Kohn-Sham potential is not a functional derivative.

Authors:  Alex P Gaiduk; Viktor N Staroverov
Journal:  J Chem Phys       Date:  2009-07-28       Impact factor: 3.488

8.  Investigation of the molecular surface area and volume: Defined and calculated by the molecular face theory.

Authors:  Li-Dong Gong; Zhong-Zhi Yang
Journal:  J Comput Chem       Date:  2010-08       Impact factor: 3.376

9.  Communication: Ionization potentials in the limit of large atomic number.

Authors:  Lucian A Constantin; John C Snyder; John P Perdew; Kieron Burke
Journal:  J Chem Phys       Date:  2010-12-28       Impact factor: 3.488

10.  Consistent van der Waals radii for the whole main group.

Authors:  Manjeera Mantina; Adam C Chamberlin; Rosendo Valero; Christopher J Cramer; Donald G Truhlar
Journal:  J Phys Chem A       Date:  2009-05-14       Impact factor: 2.781

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  2 in total

1.  Atomic-number (Z)-correlated atomic sizes for deciphering electron microscopic molecular images.

Authors:  Junfei Xing; Keishi Takeuchi; Ko Kamei; Takayuki Nakamuro; Koji Harano; Eiichi Nakamura
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-29       Impact factor: 12.779

2.  Revisiting van der Waals Radii: From Comprehensive Structural Analysis to Knowledge-Based Classification of Interatomic Contacts.

Authors:  Ivan Yu Chernyshov; Ivan V Ananyev; Evgeny A Pidko
Journal:  Chemphyschem       Date:  2020-01-23       Impact factor: 3.102

  2 in total

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