| Literature DB >> 30463335 |
Shamsunnahar Khushi1, Laizuman Nahar2, Angela A Salim3, Robert J Capon4.
Abstract
Chemical analysis of a marine sponge, Cacospongia sp. (Entities:
Keywords: Cacospongia sp.; GNPS; dereplication; sesterterpene butenolides; sesterterpene tetronic acids
Mesh:
Substances:
Year: 2018 PMID: 30463335 PMCID: PMC6266489 DOI: 10.3390/md16110456
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1Cacospongia sp. (CMB-03404) metabolites 1–15.
Figure 2Selected known Irciniidae sesterterpene tetronic acids 16–22.
13C (150 MHz) NMR Data for 1–7 in CDCl3.
| Position | 1 | 2 | 3 | 4 | 5 | 6 | 7 |
|---|---|---|---|---|---|---|---|
| 1 | 142.7 | 170.0 | 97.2 | 102.6 | 101.6 | 96.9 | 101.8 |
| 2 | 111.3 | 117.6 | 144.1 | 142.2 | 142.5 | 143.8 | 142.6 |
| 3 | 125.2 | 171.1 | 137.8 | 138.6 | 138.3 | 137.8 | 138.5 |
| 4 | 139.0 | 99.5 | 172.5 | 171.9 | 172.0 | 172.3 | 171.9 |
| 5 | 25.2 | 28.0 | 25.4 | 25.5 | 25.5 | 25.5 | 25.9 |
| 6 | 28.6 | 25.3 | 25.6 | 25.7 | 25.7 | 21.6 | 21.9 |
| 7 | 123.9 | 122.6 | 122.9 | 122.6 | 122.7 | 41.5 a | 41.6 a |
| 8 | 135.9 | 136.9 | 136.8 | 136.8 | 136.9 | 73.5 | 73.1 |
| 9 | 16.2 a | 16.1 a | 16.1 a | 16.3 | 16.0 | 26.4 | 26.9 |
| 10 | 39.9 | 39.5 | 39.5 | 39.7 | 39.7 | 41.5 a | 41.6 a |
| 11 | 26.7 | 25.9 | 26.1 | 26.5 | 26.5 | 22.9 | 22.8 |
| 12 | 124.4 | 123.9 | 124.2 | 124.2 | 124.2 | 125.1 | 125.0 |
| 13 | 135.1 | 135.4 | 135.3 | 135.2 | 135.3 | 135.2 | 135.9 |
| 14 | 16.0a | 16.1 a | 16.1 a | 16.1 | 16.2 | 16.1 | 16.0 |
| 15 | 39.9 | 39.8 | 39.8 | 39.9 | 39.8 | 39.3 | 39.5 |
| 16 | 25.2 | 25.1 | 25.1 | 25.2 | 25.2 | 24.6 | 25.1 |
| 17 | 37.6 | 37.5 | 37.5 | 37.5 | 37.3 | 36.6 | 37.5 |
| 18 | 28.7 | 28.6 | 28.6 | 29.0 | 28.7 | 28.6 | 28.6 |
| 19 | 21.1 | 21.1 | 21.2 | 21.3 | 21.2 | 21.1 | 21.0 |
| 20 | 44.9 | 44.7 | 44.7 | 44.9 | 44.8 | 45.4 b | 45.1 |
| 21 | 106.2 | 107.0 | 107.0 | 105.8 | 106.1 | 107.5 | 106.0 |
| 22 | 147.6 | 148.0 | 148.0 | 147.6 | 147.6 | 147.6 | 147.5 |
| 23 | 132.1 | 131.9 | 131.8 | 135.2 | 132.0 | 131.7 | 132.3 |
| 24 | 171.9 | 172.6 | 172.6 | 171.2 | 172.0 | 172.0 | 173.0 |
| 25 | 10.7 | 10.6 | 10.6 | 10.8 | 10.6 | 10.7 | 10.6 |
| 1-OMe | 57.3 | ||||||
| 1-O | 66.0 | 66.2 | |||||
| 1-OCH2 | 15.2 | 15.2 |
a Resonances with the same superscript within a column are interchangeable, b Detected from HMBC.
1H (600 MHz) NMR Data for 1–4 in CDCl3.
| Position | 1 | 2 | 3 | 4 |
|---|---|---|---|---|
| 1 | 7.33, br s | 6.09, br s | 5.74, br s | |
| 2 | 6.28, br s | 5.83, br s | 6.84 a, br s | 6.78, br s |
| 4 | 7.21, br s | 6.01, br s | ||
| 5 | 2.45, t (7.7) | a 2.52, mb 2.39, m | 2.32, t (7.3) | 2.34, t (7.3) |
| 6 | 2.24, dt 7.3, 7.7) | 2.30, dt (7.2, 7.2) | 2.26, dt (7.2, 7.3) | 2.26, dt (7.3, 7.2) |
| 7 | 5.16 (br t, 7.3) | 5.09, br t (7.2) | 5.09, br t, (7.2) | 5.10, br t (7.2) |
| 9 | 1.59, s | 1.61 (s) | 1.59, s | 1.61, s |
| 10 | 2.01, t (7.4) | 2.02, t (7.0) | 2.01, t (7.0) | 2.01, t (7.0) |
| 11 | 2.07, dt (7.4, 7.4) | 2.09, dt (7.0, 7.0) | 2.08, dt (7.0, 7.3) | 2.08, dt (7.0, 7.3) |
| 12 | 5.04, br t (7.4) | 5.02, br t (7.0) | 5.04, br t (7.3) | 5.07, br t (7.3) |
| 14 | 1.57, s | 1.56 (s) | 1.56, s | 1.57, s |
| 15 | 1.93 a | 1.91, m | 1.92, m | 1.94 a, m |
| 16 | 1.36, m | 1.34, m | 1.35, m | 1.35, m |
| 17 | a 1.30, m | a 1.29, m | a 1.30, m | a 1.30, m |
| 18 | 1.64, m | 1.64, m | 1.63, m | 1.65, m |
| 19 | 0.96, br d (6.7) | 0.94, br d (6.5) | 0.94, br d (6.3) | 0.96, s |
| 20 | a 1.94 a
| a 1.95, m | a 1.93, m | a 1.94 a, m |
| 22 | 6.82, br s | 6.85 (br s) | 6.84 a, br s | 6.84, br s |
| 25 | 1.93 a, s | 1.90 (s) | 1.90, s | 1.94 a, s |
| 1-OMe | 3.56, s |
a Resonances with the same superscript within a column are overlapping signals.
Figure 3Selected 2D NMR (CDCl3) correlations for cacolides A–C (1–3).
1H (600 MHz) NMR Data for 5–8 in CDCl3.
| Position | 5 | 6 | 7 |
|---|---|---|---|
| 1 | 5.80, br s | 6.05, br s | 5.82, br s |
| 2 | 6.78, d (1.4) | 6.89, br s | 6.81, br s |
| 5 | 2.33, t (7.3) | 2.32, m | 2.30, (7.3) |
| 6 | 2.26, dt (7.2, 7.3) | 1.64 a | 1.64 a |
| 7 | 5.10, br t (7.2) | a 1.55 b
| a 1.64 a
|
| 9 | 1.59, s | 1.19, s | 1.18, s |
| 10 | 1.99, t (7.0) | a 1.55 b
| a 1.64 a |
| 11 | 2.06, dt (7.3, 7.0) | 2.07, m | 2.05, m |
| 12 | 5.06, br t (7.3) | 5.27 (m) | 5.15, m |
| 14 | 1.57, s | 1.64 a, br s | 1.60, br s |
| 15 | 1.93 a, m | 1.97, m | 1.96, m |
| 16 | 1.36, m | 1.41, m | 1.36, m |
| 17 | a 1.27 b, m | a 1.31, m | a 1.33, m |
| 18 | 1.67, m | 1.70, m | 1.66, m |
| 19 | 0.96, s | 0.94, br d (7.0) | 0.96, br d (6.8) |
| 20 | a 1.93 a
| # | a 1.93 c, m |
| 22 | 6.83, br s | 6.85, br s | 6.83, br s |
| 25 | 1.93 a, s | 1.91, s | 1.93 c, s |
| 1-O | a 3.91, m | a 3.93, m | |
| 1-OCH2 | 1.27 b, t (7.0) | 1.27, t (7) |
a–c Resonances with the same superscript within a column are overlapping signals; # Not detected.
Figure 4Selected 2D NMR (CDCl3) correlations for cacolides D–E (4–5).
Figure 5Selected 2D NMR (CDCl3) correlations for cacolides F–G (6–7).
13C (150 MHz) NMR Data for 8–15 in CDCl3.
| Position | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 |
|---|---|---|---|---|---|---|---|---|
| 1 | 173.5 | 52.1 | 51.7 | 173.2 | 52.1 | 171.4 | 171.4 | 97.2 |
| 2 | 121.0 | 136.9 | 136.0 | 121.5 | 136.9 | 118.0 | 118.0 | 143.9 |
| 3 | 162.3 | 139.2 | 139.9 | 161.8 | 139.4 | 169.5 | 169.5 | 138.6 |
| 4 | 55.7 | 173.3 | 173.1 | 55.6 | 173.0 | 99.3 | 99.3 | 172.3 |
| 5 | 30.0 | 25.9 | 26.3 | 30.3 | 26.5 | 27.9 | 27.9 | 25.3 |
| 6 | 26.0 | 26.0 | 26.1 | 22.3 | 22.3 | 25.3 | 25.3 | 25.6 |
| 7 | 122.8 | 123.7 | 124.1 | 41.5 a | 41.5 a | 122.6 | 122.8 | 123.0 |
| 8 | 136.8 | 135.9 | 135.6 | 72.7 | 73.4 | 137.3 | 137.0 | 137.3 |
| 9 | 16.2 | 16.1 | 16.1 | 27.0 | 26.8 | 16.2 | 16.1 | 16.2 |
| 10 | 39.6 | 39.5 | 39.6 | 41.5 a | 41.5 a | 39.4 | 39.4 | 39.6 |
| 11 | 26.2 | 26.1 | 25.9 | 23.0 | 22.8 | 26.1 | 25.8 | 26.1 |
| 12 | 124.1 | 124.3 | 124.2 | 125.0 | 125.1 | 124.1 | 124.1 | 124.4 |
| 13 | 135.3 | 135.4 | 135.2 | 134.8 | 135.4 | 135.5 | 135.2 | 135.6 |
| 14 | 16.1 | 16.0 | 16.0 | 16.1 | 15.9 | 16.1 | 16.1 | 16.2 |
| 15 | 39.8 | 39.8 | 39.9 | 39.5 | 39.4 | 39.7 | 39.5 | 39.6 |
| 16 | 25.1 | 25.1 | 25.1 | 24.7 | 24.5 | 25.2 | 25.6 | 25.6 |
| 17 | 37.4 | 37.0 | 37.8 | 37.1 | 37.0 | 36.4 | 33.4 | 33.6 |
| 18 | 28.6 | 29.1 | 28.8 | 28.6 | 28.5 | 29.7 | 39.2 | 39.1 |
| 19 | 21.1 | 21.1 | 21.4 | 21.3 | 21.1 | 20.1 | 17.2 | 17.3 |
| 20 | 44.8 | 44.8 | 44.9 | 44.9 b | 45.2 | 52.6 | 180.2 | 180.4 |
| 21 | 107.5 | 107.5 | # | # | 107.8 | 202.9 | ||
| 22 | 148.0 | 148.0 | 148.1 | 147.5 | 148.1 | 133.8 | ||
| 23 | 131.7 | 131.7 | 132.0 | 132.0 | 131.7 | 140.5 | ||
| 24 | 172.4 | 171.9 | 175.5 | 172.0 | 172.4 | 170.7 | ||
| 25 | 10.8 | 10.6 | 10.7 | 10.6 | 10.8 | 14.4 | ||
| 1′ | 43.7 | 44.1 | 43.8 | 44.1 | 44.4 | |||
| 2′ | 171.7 | 172.6 | 170.3 | 171.6 | 171.3 | |||
| 1-OMe | 52.4 |
a Resonances with the same superscript within a column are interchangeable, b Detected from HMBC, # Not detected.
1H (600 MHz) NMR Data for 8–12 in CDCl3.
| Position | 8 | 9 | 10 | 11 | 12 |
|---|---|---|---|---|---|
|
| 4.03, br s | 4.00, br s | 4.02, br s | ||
|
| 5.91, br s | 6.77, br s | 6.74, br s | 5.93, br s | 6.78, br s |
|
| 4.04, br s | 4.04, br s | |||
|
| 2.43, t (7.5) | 2.30, t (7.2) | 2.32, t (7.2) | 2.40, t (7.5) | 2.32, t (7.5) |
|
| 2.28, m | 2.24, dt (7.3, 7.3) | 2.25, dt (7.3, 7.3) | 1.66 a, m | 1.61, m |
|
| 5.09, br t (7.0) | 5.11, br t (7.3) | 5.15, br t (7.3) | a 1.54 b
| a 1.52 a
|
|
| 1.60, s | 1.59, s | 1.60, s | 1.19, s | 1.18, s |
|
| 2.02, m | 2.01, t (7.0) | 2.03, t (7.0) | a 1.54 b | a 1.52 a
|
|
| 2.09, m | 2.08, dt (7.0, 7.0) | 2.10, dt (7.0, 7.0) | 2.07, m | 2.05, m |
|
| 5.04, br t (7.0) | 5.04, br t (7.0) | 5.06, br t (7.0) | 5.15, br t (7.0) | 5.14, br t (7.0) |
|
| 1.56, br s | 1.56, s | 1.56, s | 1.59, br s | 1.59, br s |
|
| 1.92, m | 1.92, m | 1.93, m | 1.96, m | 1.95 c |
|
| 1.36, m | 1.36, m | 1.37, m | 1.39, m | 1.39, m |
|
| a 1.30, m | a 1.27, m | a 1.28, m | a 1.32, m | a 1.33, m |
|
| 1.64, m | 1.62, m | 1.64, m | 1.66 a, m | 1.65, m |
|
| 0.94, br d (7.0) | 0.94, br s | 0.95, br s | 0.94, br d (7.0) | 0.94, br d (7.0) |
|
| a 1.95, m | a 1.95, m | a 2.00, m | # | a 1.95 c
|
|
| 6.82, br s | 6.83, br s | 6.83, br s | 6.81, br s | 6.83, s |
|
| 1.90, s | 1.90, s | 1.91, s | 1.91, s | 1.90, s |
|
| a 4.22, m | a 4.28, m | a 4.25, m | 4.21, br s | 4.23, s |
|
| 3.74, s |
a–c Resonances with the same superscript within a column are overlapping signals, # Not detected.
Figure 6Selected 2D NMR (CDCl3) correlations for cacolides H–L (8–12).
1H (600 MHz) NMR Data for 13–15 in CDCl3.
| Position | 13 | 14 | 15 |
|---|---|---|---|
|
| 6.09, br s | ||
|
| 5.85, br s | 5.88, br s | 6.84, br s |
|
| 5.99, br s | 6.01, br | |
|
| 2.46, m | 2.47 a | 2.32, t (7.3) |
|
| 2.32, m | 2.33, m | 2.25, dt (7.3, 7.2) |
|
| 5.09, br t (7.3) | 5.10, br t (7.3) | 5.09 br t (7.2) |
|
| 1.59, br s | 1.64 b, br s | 1.64 a, s |
|
| 2.03 a | 2.06, m | 2.02, br t (7.0) |
|
| 2.09 (m) | 2.12, m | 2.09, dt (7.2, 7.0) |
|
| 5.03, br t (7.0) | 5.06, br t (7.0) | 5.04, br t (7.2) |
|
| 1.57, br s | 1.59, br s | 1.57, s |
|
| 1.94, m | 1.98, m | 1.96, m |
|
| 1.37, m | 1.42 c | 1.42 b |
|
| a 1.25, m | a 1.64 b
| a 1.64 a |
|
| 2.03 a | 2.47 a | 2.47, m |
|
| 0.91, br d (6.7) | 1.19, br d (7.2) | 1.17, br d (7.0) |
|
| a. 2.53, m | ||
|
| 7.11, br s | ||
|
| 2.20, s |
a–c Resonances with the same superscript within a column are overlapping signals.
Figure 7Selected 2D NMR (CDCl3) correlations for cacolic acids A–C (13–15).
Scheme 1Plausible biosynthetic relationship between the C-1 to C-4 termini in 1–15.
Scheme 2Plausible biosynthetic relationship between the C-17 to C-25 termini in 1–15.
Figure 8Molecular networking of n-BuOH solubles from (A) five specimens of Ircinia spp., (B) five specimens of Psammocinia spp., (C) five specimens of Sarcotragus spp. and (D) Cacospongia sp. (CMB-03404). Red nodes: the two authentic standards, (7E,12E,20Z,18S)-variabilin (16) and ircinialactam A (20).