| Literature DB >> 30460760 |
Fanglin Niu1, Tianchang Wang2, Jing Li1, Mengdan Yan1, Dianzhen Li1, Bin Li1, Tianbo Jin1,3,4,5.
Abstract
BACKGROUND: Disordered inflammation and immune response is an acknowledged risk factor for cervical cancer development. Interleukin-1 receptor type 2 (IL1R2) is a decoy receptor for IL-1 cytokines and involved in host inflammatory and immune progression which could lead to the lesion and neoplasia of cervix. In this study, we aimed to evaluate the relationships between IL1R2 polymorphisms and cervical cancer risk in Uygur females from China.Entities:
Keywords: zzm321990IL1R2zzm321990; Uygur females; cervical cancer; genetic polymorphisms; inflammatory and immune response; population-based study
Mesh:
Substances:
Year: 2018 PMID: 30460760 PMCID: PMC6382450 DOI: 10.1002/mgg3.516
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Distribution of age in cervical cancer cases and healthy controls
| Cases ( | Controls ( |
| |
|---|---|---|---|
| Age (years) | 54.55 | 50.82 | <0.001 |
| Standard deviation | 10.31 | 15.18 |
p‐value obtained from independent sample t test.
Basic information and allele frequencies of the selected SNPs in IL1R2
| SNP | Chromosome | Position | Alleles A<B | Gene | Role | Minor allele frequency |
HWE | OR (95% CI) |
| |
|---|---|---|---|---|---|---|---|---|---|---|
| Case | Control | |||||||||
| rs11674595 | chr2 | 102610992 | C<T | IL1R2 | Intron | 0.211 | 0.230 | 1.000 | 0.899 (0.671–1.204) | 0.474 |
| rs4851527 | chr2 | 102622376 | A<G | IL1R2 | Intron | 0.336 | 0.392 | 0.536 | 0.786 (0.612–1.011) | 0.060 |
| rs719250 | chr2 | 102623718 | T<C | IL1R2 | Intron | 0.267 | 0.202 | 0.139 |
|
|
| rs3218896 | chr2 | 102631652 | C<T | IL1R2 | Intron | 0.154 | 0.105 | 1.000 |
|
|
| rs3218977 | chr2 | 102641201 | G<A | IL1R2 | Intron | 0.217 | 0.224 | 0.174 | 0.959 (0.717–1.283) | 0.778 |
| rs2072472 | chr2 | 102643019 | G<A | IL1R2 | Intron | 0.227 | 0.230 | 0.616 | 0.983 (0.737–1.309) | 0.904 |
GenBank reference sequence version number of IL1R2: NC_000002.12.
Italics indicates the SNP with statistical significance (p < 0.05).
HWE: Hardy–Weinberg equilibrium; IL1R2: interleukin‐1 receptor type 2; OR: odd ratio; SNP: single nucleotide polymorphism; 95% CI: 95% confidence interval.
p‐values obtained from Fisher's exact test.
p‐values obtained from Pearson χ2 test.
Significant genetic variants in IL1R2 related to the risk of cervical cancer
| SNP | Model | Genotype | Control | Case | Crude analysis without adjustment | Adjustment for age | ||
|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| |||||
| rs4851527 (call rate 100%) | Codominant | G/G | 103 (36.0%) | 103 (41.7%) | 1.00 | 0.110 | 1.00 | 0.210 |
| G/A | 142 (49.7%) | 122 (49.4%) | 0.86 (0.60–1.24) | 0.89 (0.62–1.29) | ||||
| A/A | 41 (14.3%) | 22 (8.9%) | 0.54 (0.30–0.96) | 0.59 (0.32–1.06) | ||||
| Dominant | G/G | 103 (36.0%) | 103 (41.7%) | 1.00 | 0.180 | 1.00 | 0.290 | |
| G/A‐A/A | 183 (64.0%) | 144 (58.3%) | 0.79 (0.55–1.12) | 0.83 (0.58–1.18) | ||||
| Recessive | G/G‐G/A | 245 (85.7%) | 225 (91.1%) | 1.00 |
| 1.00 | 0.095 | |
| A/A | 41 (14.3%) | 22 (8.9%) |
| 0.63 (0.36–1.09) | ||||
| Log‐additive | — | — | — |
|
| 0.81 (0.62–1.05) | 0.110 | |
| rs719250 (call rate 99.62%) | Codominant | C/C | 185 (65.1%) | 125 (50.6%) | 1.00 |
| 1.00 |
|
| T/C | 83 (29.2%) | 112 (45.3%) |
|
| ||||
| T/T | 16 (5.6%) | 10 (4.0%) | 0.93 (0.41–2.10) | 0.93 (0.41–2.14) | ||||
| Dominant | C/C | 185 (65.1%) | 125 (50.6%) | 1.00 |
| 1.00 |
| |
| T/C‐T/T | 99 (34.9%) | 122 (49.4%) |
|
| ||||
| Recessive | C/C‐T/C | 268 (94.4%) | 237 (96.0%) | 1.00 | 0.400 | 1.00 | 0.420 | |
| T/T | 16 (5.6%) | 10 (4.0%) | 0.71 (0.31–1.59) | 0.72 (0.32–1.62) | ||||
| Log‐additive | — | — | — |
|
|
|
| |
| rs3218896 (call rate 100%) | Codominant | T/T | 229 (80.1%) | 174 (70.5%) | 1.00 |
| 1.00 |
|
| T/C | 54 (18.9%) | 70 (28.3%) |
|
| ||||
| C/C | 3 (1.0%) | 3 (1.2%) | 1.32 (0.26–6.60) | 1.21 (0.23–6.25) | ||||
| Dominant | T/T | 229 (80.1%) | 174 (70.5%) | 1.00 |
| 1.00 |
| |
| T/C‐C/C | 57 (19.9%) | 73 (29.6%) |
|
| ||||
| Recessive | T/T‐T/C | 283 (99.0%) | 244 (98.8%) | 1.00 | 0.860 | 1.00 | 0.940 | |
| C/C | 3 (1.0%) | 3 (1.2%) | 1.16 (0.23–5.80) | 1.07 (0.21–5.50) | ||||
| Log‐additive | — | — | — |
|
|
|
| |
Italics indicates the SNP with statistical significance (p < 0.05).
IL1R2: interleukin‐1 receptor type 2; OR: odds ratio; SNP: single nucleotide polymorphism; 95% CI: 95% confidence interval.
p‐values calculated by logistic regression analysis.
p‐values calculated by logistic regression analysis with adjustment for age.
Figure 1Linkage disequilibrium (LD) analysis of the six single nucleotide polymorphisms (SNPs) in interleukin‐1 receptor type 2 (IL1R2). Three haplotype blocks are formed by rs11674595 and rs4851527 (Block 1, 11 kb), rs719250 and rs3218896 (Block 2, 7 kb), rs3218977 and rs2072472 (Block 3, 1 kb), respectively. Standard color schemes indicate different levels of LD. Bright red: LOD > 2, D′ = 1; Pink red: LOD < 2, D′ < 1; Blue: LOD < 2, D′ = 1; White: LOD < 2, D′ < 1; LOD: Log of the odds of there being LD between two loci.
Haplotype analysis of the variants in IL1R2 and the association with cervical cancer risk
| Haplotype | Frequency | Crude analysis without adjustment | Adjustment for age | ||||
|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| ||||
| Block 1 | rs11674595 | rs4851527 | |||||
| T | G | 0.4136 | 1.00 | — | 1.00 | — | |
| T | A | 0.3659 |
|
|
|
| |
| C | G | 0.2205 | 0.76 (0.55–1.05) | 0.100 | 0.77 (0.56–1.07) | 0.120 | |
| Block 2 | rs719250 | rs3218896 | |||||
| C | T | 0.7679 | 1.00 | — | 1.00 | — | |
| T | C | 0.1276 |
|
|
|
| |
| T | T | 0.1045 | 1.28 (0.86–1.91) | 0.220 | 1.28 (0.86–1.92) | 0.230 | |
| Block 3 | rs3218977 | rs2072472 | |||||
| A | A | 0.5510 | 1.00 | — | 1.00 | — | |
| A | G | 0.2285 | 0.96 (0.71–1.31) | 0.810 | 0.94 (0.69–1.29) | 0.700 | |
| G | A | 0.2205 | 0.94 (0.69–1.30) | 0.720 | 0.89 (0.64–1.23) | 0.480 | |
Italics indicates the haplotype with statistical significance (p < 0.05).
IL1R2: interleukin‐1 receptor type 2; OR: odds ratio; 95% CI: 95% confidence interval.
p‐values calculated by logistic regression analysis.
p‐values calculated by logistic regression analysis with adjustment for age.