Literature DB >> 30458407

Probabilistic genotyping software: An overview.

Michael D Coble1, Jo-Anne Bright2.   

Abstract

The interpretation of mixed profiles from DNA evidentiary material is one of the more challenging duties of the forensic scientist. Traditionally, analysts have used a "binary" approach to interpretation where inferred genotypes are either included or excluded from the mixture using a stochastic threshold and other biological parameters such as heterozygote balance, mixture ratio, and stutter ratios. As the sensitivity of STR multiplexes and capillary electrophoresis instrumentation improved over the past 25 years, coupled with the change in the type of evidence being submitted for analysis (from high quality and quantity (often single-source) stains to low quality and quantity (often mixed) "touch" samples), the complexity of DNA profile interpretation has equally increased. This review provides a historical perspective on the movement from binary methods of interpretation to probabilistic methods of interpretation. We describe the two approaches to probabilistic genotyping (semi-continuous and fully continuous) and address issues such as validation and court acceptance. Areas of future needs for probabilistic software are discussed.
Copyright © 2018 Elsevier B.V. All rights reserved.

Keywords:  DNA mixture; Forensic DNA; Interpretation; Mixture software; Probabilistic genotyping; Validation

Mesh:

Substances:

Year:  2018        PMID: 30458407     DOI: 10.1016/j.fsigen.2018.11.009

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  15 in total

1.  MaSTR™: an effective probabilistic genotyping tool for interpretation of STR mixtures associated with differentially degraded DNA.

Authors:  Mitchell M Holland; Teresa M Tiedge; Abigail J Bender; Sidney A Gaston-Sanchez; Jennifer A McElhoe
Journal:  Int J Legal Med       Date:  2022-01-29       Impact factor: 2.686

2.  Evaluating Mixture Solution™- rapid and non-MCMC probabilistic mixture analysis.

Authors:  Anton Lucassen; Karen Ehlers; Paul J Grobler; Charles H Brenner
Journal:  Int J Legal Med       Date:  2021-10-01       Impact factor: 2.686

3.  Open practices in our science and our courtrooms.

Authors:  Michael D Edge; Jeanna Neefe Matthews
Journal:  Trends Genet       Date:  2021-11-02       Impact factor: 11.821

Review 4.  Interpol review of forensic biology and forensic DNA typing 2016-2019.

Authors:  John M Butler; Sheila Willis
Journal:  Forensic Sci Int       Date:  2020-02-20       Impact factor: 2.395

5.  A Continuous Statistical Phasing Framework for the Analysis of Forensic Mitochondrial DNA Mixtures.

Authors:  Utpal Smart; Jennifer Churchill Cihlar; Sammed N Mandape; Melissa Muenzler; Jonathan L King; Bruce Budowle; August E Woerner
Journal:  Genes (Basel)       Date:  2021-01-20       Impact factor: 4.096

6.  Uncertainty in estimating the number of contributors from simulated DNA mixture profiles, with and without allele dropout, from Chinese, Malay, Indian, and Caucasian ethnic populations.

Authors:  Kevin Wai Yin Chong; Christopher Kiu-Choong Syn
Journal:  Sci Rep       Date:  2021-03-04       Impact factor: 4.996

7.  Graph Algorithms for Mixture Interpretation.

Authors:  Benjamin Crysup; August E Woerner; Jonathan L King; Bruce Budowle
Journal:  Genes (Basel)       Date:  2021-01-27       Impact factor: 4.096

8.  Interpreting Mixture Profiles: Comparison between Precision ID GlobalFiler™ NGS STR Panel v2 and Traditional Methods.

Authors:  Michele Ragazzo; Stefania Carboni; Valerio Caputo; Carlotta Buttini; Laura Manzo; Valeria Errichiello; Giulio Puleri; Emiliano Giardina
Journal:  Genes (Basel)       Date:  2020-05-26       Impact factor: 4.096

9.  Low temperature isothermal amplification of microsatellites drastically reduces stutter artifact formation and improves microsatellite instability detection in cancer.

Authors:  Antoine Daunay; Alex Duval; Laura G Baudrin; Olivier Buhard; Victor Renault; Jean-François Deleuze; Alexandre How-Kit
Journal:  Nucleic Acids Res       Date:  2019-12-02       Impact factor: 16.971

10.  Interpretation of DNA data within the context of UK forensic science - evaluation.

Authors:  Roberto Puch-Solis; Susan Pope
Journal:  Emerg Top Life Sci       Date:  2021-09-24
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.