Literature DB >> 30450825

Technical Note: More accurate and efficient segmentation of organs-at-risk in radiotherapy with convolutional neural networks cascades.

Kuo Men1,2, Huaizhi Geng1, Chingyun Cheng1, Haoyu Zhong1, Mi Huang1, Yong Fan1, John P Plastaras1, Alexander Lin1, Ying Xiao1.   

Abstract

PURPOSE: Manual delineation of organs-at-risk (OARs) in radiotherapy is both time-consuming and subjective. Automated and more accurate segmentation is of the utmost importance in clinical application. The purpose of this study is to further improve the segmentation accuracy and efficiency with a novel network named convolutional neural networks (CNN) Cascades.
METHODS: CNN Cascades was a two-step, coarse-to-fine approach that consisted of a simple region detector (SRD) and a fine segmentation unit (FSU). The SRD first used a relative shallow network to define the region of interest (ROI) where the organ was located, and then, the FSU took the smaller ROI as input and adopted a deep network for fine segmentation. The imaging data (14,651 slices) of 100 head-and-neck patients with segmentations were used for this study. The performance was compared with the state-of-the-art single CNN in terms of accuracy with metrics of Dice similarity coefficient (DSC) and Hausdorff distance (HD) values.
RESULTS: The proposed CNN Cascades outperformed the single CNN on accuracy for each OAR. Similarly, for the average of all OARs, it was also the best with mean DSC of 0.90 (SRD: 0.86, FSU: 0.87, and U-Net: 0.85) and the mean HD of 3.0 mm (SRD: 4.0, FSU: 3.6, and U-Net: 4.4). Meanwhile, the CNN Cascades reduced the mean segmentation time per patient by 48% (FSU) and 5% (U-Net), respectively.
CONCLUSIONS: The proposed two-step network demonstrated superior performance by reducing the input region. This potentially can be an effective segmentation method that provides accurate and consistent delineation with reduced clinician interventions for clinical applications as well as for quality assurance of a multicenter clinical trial.
© 2018 American Association of Physicists in Medicine.

Entities:  

Keywords:  CNN Cascades; automated segmentation; deep learning; radiotherapy

Mesh:

Year:  2018        PMID: 30450825      PMCID: PMC6322972          DOI: 10.1002/mp.13296

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  24 in total

1.  Auto-segmentation of normal and target structures in head and neck CT images: a feature-driven model-based approach.

Authors:  Arish A Qazi; Vladimir Pekar; John Kim; Jason Xie; Stephen L Breen; David A Jaffray
Journal:  Med Phys       Date:  2011-11       Impact factor: 4.071

2.  Variations in the contouring of organs at risk: test case from a patient with oropharyngeal cancer.

Authors:  Benjamin E Nelms; Wolfgang A Tomé; Greg Robinson; James Wheeler
Journal:  Int J Radiat Oncol Biol Phys       Date:  2010-12-01       Impact factor: 7.038

3.  Generalized overlap measures for evaluation and validation in medical image analysis.

Authors:  William R Crum; Oscar Camara; Derek L G Hill
Journal:  IEEE Trans Med Imaging       Date:  2006-11       Impact factor: 10.048

4.  Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context.

Authors:  Aurélie Isambert; Frédéric Dhermain; François Bidault; Olivier Commowick; Pierre-Yves Bondiau; Grégoire Malandain; Dimitri Lefkopoulos
Journal:  Radiother Oncol       Date:  2007-12-26       Impact factor: 6.280

5.  The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository.

Authors:  Kenneth Clark; Bruce Vendt; Kirk Smith; John Freymann; Justin Kirby; Paul Koppel; Stephen Moore; Stanley Phillips; David Maffitt; Michael Pringle; Lawrence Tarbox; Fred Prior
Journal:  J Digit Imaging       Date:  2013-12       Impact factor: 4.056

6.  Dosimetric evaluation of automatic segmentation for adaptive IMRT for head-and-neck cancer.

Authors:  Stuart Y Tsuji; Andrew Hwang; Vivian Weinberg; Sue S Yom; Jeanne M Quivey; Ping Xia
Journal:  Int J Radiat Oncol Biol Phys       Date:  2010-03-16       Impact factor: 7.038

7.  Tissue segmentation of head and neck CT images for treatment planning: a multiatlas approach combined with intensity modeling.

Authors:  Valerio Fortunati; René F Verhaart; Fedde van der Lijn; Wiro J Niessen; Jifke F Veenland; Margarethus M Paulides; Theo van Walsum
Journal:  Med Phys       Date:  2013-07       Impact factor: 4.071

8.  Automatic segmentation and online virtualCT in head-and-neck adaptive radiation therapy.

Authors:  Marta Peroni; Delia Ciardo; Maria Francesca Spadea; Marco Riboldi; Stefania Comi; Daniela Alterio; Guido Baroni; Roberto Orecchia
Journal:  Int J Radiat Oncol Biol Phys       Date:  2012-06-05       Impact factor: 7.038

9.  Variability of target and normal structure delineation for breast cancer radiotherapy: an RTOG Multi-Institutional and Multiobserver Study.

Authors:  X Allen Li; An Tai; Douglas W Arthur; Thomas A Buchholz; Shannon Macdonald; Lawrence B Marks; Jean M Moran; Lori J Pierce; Rachel Rabinovitch; Alphonse Taghian; Frank Vicini; Wendy Woodward; Julia R White
Journal:  Int J Radiat Oncol Biol Phys       Date:  2009-03-01       Impact factor: 7.038

10.  Atlas-based automatic segmentation of head and neck organs at risk and nodal target volumes: a clinical validation.

Authors:  Jean-François Daisne; Andreas Blumhofer
Journal:  Radiat Oncol       Date:  2013-06-26       Impact factor: 3.481

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  12 in total

1.  Anatomically consistent CNN-based segmentation of organs-at-risk in cranial radiotherapy.

Authors:  Pawel Mlynarski; Hervé Delingette; Hamza Alghamdi; Pierre-Yves Bondiau; Nicholas Ayache
Journal:  J Med Imaging (Bellingham)       Date:  2020-02-13

2.  Machine-assisted interpolation algorithm for semi-automated segmentation of highly deformable organs.

Authors:  Dishane C Luximon; Yasin Abdulkadir; Phillip E Chow; Eric D Morris; James M Lamb
Journal:  Med Phys       Date:  2021-11-27       Impact factor: 4.071

Review 3.  A Survey on Deep Learning for Precision Oncology.

Authors:  Ching-Wei Wang; Muhammad-Adil Khalil; Nabila Puspita Firdi
Journal:  Diagnostics (Basel)       Date:  2022-06-17

4.  [Segmentation of organs at risk in nasopharyngeal cancer for radiotherapy using a self-adaptive Unet network].

Authors:  Xin Yang; Xueyan Li; Xiaoting Zhang; Fan Song; Sijuan Huang; Yunfei Xia
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2020-11-30

5.  A Preliminary Experience of Implementing Deep-Learning Based Auto-Segmentation in Head and Neck Cancer: A Study on Real-World Clinical Cases.

Authors:  Yang Zhong; Yanju Yang; Yingtao Fang; Jiazhou Wang; Weigang Hu
Journal:  Front Oncol       Date:  2021-05-05       Impact factor: 6.244

6.  A convolutional neural network approach for IMRT dose distribution prediction in prostate cancer patients.

Authors:  Tomohiro Kajikawa; Noriyuki Kadoya; Kengo Ito; Yoshiki Takayama; Takahito Chiba; Seiji Tomori; Hikaru Nemoto; Suguru Dobashi; Ken Takeda; Keiichi Jingu
Journal:  J Radiat Res       Date:  2019-10-23       Impact factor: 2.724

7.  CNN-Based Quality Assurance for Automatic Segmentation of Breast Cancer in Radiotherapy.

Authors:  Xinyuan Chen; Kuo Men; Bo Chen; Yu Tang; Tao Zhang; Shulian Wang; Yexiong Li; Jianrong Dai
Journal:  Front Oncol       Date:  2020-04-28       Impact factor: 6.244

8.  Evaluation of deep learning-based auto-segmentation algorithms for delineating clinical target volume and organs at risk involving data for 125 cervical cancer patients.

Authors:  Zhi Wang; Yankui Chang; Zhao Peng; Yin Lv; Weijiong Shi; Fan Wang; Xi Pei; X George Xu
Journal:  J Appl Clin Med Phys       Date:  2020-11-25       Impact factor: 2.102

9.  Automated Quality Assurance of OAR Contouring for Lung Cancer Based on Segmentation With Deep Active Learning.

Authors:  Kuo Men; Huaizhi Geng; Tithi Biswas; Zhongxing Liao; Ying Xiao
Journal:  Front Oncol       Date:  2020-07-03       Impact factor: 6.244

10.  Generating High-Quality Lymph Node Clinical Target Volumes for Head and Neck Cancer Radiation Therapy Using a Fully Automated Deep Learning-Based Approach.

Authors:  Carlos E Cardenas; Beth M Beadle; Adam S Garden; Heath D Skinner; Jinzhong Yang; Dong Joo Rhee; Rachel E McCarroll; Tucker J Netherton; Skylar S Gay; Lifei Zhang; Laurence E Court
Journal:  Int J Radiat Oncol Biol Phys       Date:  2020-10-14       Impact factor: 8.013

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