| Literature DB >> 30450093 |
Abstract
Sulfur is an essential element in all living organisms. In tRNA molecules, there are many sulfur-containing nucleosides, introduced post-transcriptionally, that function to ensure proper codon recognition or stabilization of tRNA structure, thereby enabling accurate and efficient translation. The biosynthesis of tRNA sulfur modifications involves unique sulfur trafficking systems that are closely related to cellular sulfur metabolism, and "modification enzymes" that incorporate sulfur atoms into tRNA. Herein, recent biochemical and structural characterization of the biosynthesis of sulfur modifications in tRNA is reviewed, with special emphasis on the reaction mechanisms of modification enzymes. It was recently revealed that TtuA/Ncs6-type 2-thiouridylases from thermophilic bacteria/archaea/eukaryotes are oxygen-sensitive iron-sulfur proteins that utilize a quite different mechanism from other 2-thiouridylase subtypes lacking iron-sulfur clusters such as bacterial MnmA. The various reaction mechanisms of RNA sulfurtransferases are also discussed, including tRNA methylthiotransferase MiaB (a radical S-adenosylmethionine-type iron-sulfur enzyme) and other sulfurtransferases involved in both primary and secondary sulfur-containing metabolites.Entities:
Keywords: biosynthesis; iron-sulfur cluster; post-transcriptional modification; radical SAM enzyme; sulfur modification; sulfurtransferase; tRNA
Year: 2018 PMID: 30450093 PMCID: PMC6225789 DOI: 10.3389/fmicb.2018.02679
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
FIGURE 1Sulfur modifications in tRNAs and other sulfur-containing metabolites. (A) Chemical structures of sulfur modifications in tRNAs. (B) Positions of thionucleosides in tRNAs. (C) Examples of sulfur-containing cofactors and secondary metabolites.
FIGURE 2Two-step reaction mechanism of representative (methyl)sulfurtransferases. (A) The 2-thiouridylation reaction catalyzed by MnmA. A protein persulfide is utilized as the sulfur donor. (B) Crystal structure of Escherichia coli MnmA, showing the tRNA complex with an adenylated intermediate (PDB ID: 2deu). The backbone of the tRNA and the PP-loop of MnmA are colored orange and pink, respectively. The two catalytic cysteines (Cys102 and Cys199) are shown in stick representation. (C) The 2-thiouridylation reaction catalyzed by TtuA/Ncs6. A protein thiocarboxylate may be utilized directly as shown in scheme (1). Alternatively, a free sulfide from the thiocarboxylate may be utilized once trapped by the Fe-S cluster as shown in scheme (2). (D) Crystal structure of the Thermus thermophilus TtuA (blue)-TtuB (green) complex (modeled from PDB ID: 5b4e and 5gha). The ATP analog bound to the PP-loop (pink), and the C-terminus of TtuB and the Fe-S cluster encounter one another in the catalytic center of TtuA. Note that two residues of the C-terminus of TtuB are not visible. (E) The 2-methylthioadenylation reaction catalyzed by MiaB. A methylsufide formed on the auxiliary (Aux) cluster is utilized as a substrate. (F) Crystal structure of Thermotoga maritima RimO clearly showing the pentasulfide bridging the rSAM and Aux clusters (PDB ID: 4jc0).