Eric K Gibbons1, Kyler K Hodgson2, Akshay S Chaudhari3, Lorie G Richards4, Jennifer J Majersik5, Ganesh Adluru1, Edward V R DiBella1. 1. Department of Radiology and Imaging Sciences, University of Utah, Salt Lake City, Utah. 2. Department of Bioengineering, University of Utah, Salt Lake City, Utah. 3. Department of Radiology, Stanford University, Stanford, California. 4. Department of Occupational and Recreational Therapies, University of Utah, Salt Lake City, Utah. 5. Department of Neurology, University of Utah, Salt Lake City, Utah.
Abstract
PURPOSE: To develop a robust multidimensional deep-learning based method to simultaneously generate accurate neurite orientation dispersion and density imaging (NODDI) and generalized fractional anisotropy (GFA) parameter maps from undersampled q-space datasets for use in stroke imaging. METHODS: Traditional diffusion spectrum imaging (DSI) capable of producing accurate NODDI and GFA parameter maps requires hundreds of q-space samples which renders the scan time clinically untenable. A convolutional neural network (CNN) was trained to generated NODDI and GFA parameter maps simultaneously from 10× undersampled q-space data. A total of 48 DSI scans from 15 stroke patients and 14 normal subjects were acquired for training, validating, and testing this method. The proposed network was compared to previously proposed voxel-wise machine learning based approaches for q-space imaging. Network-generated images were used to predict stroke functional outcome measures. RESULTS: The proposed network achieves significant performance advantages compared to previously proposed machine learning approaches, showing significant improvements across image quality metrics. Generating these parameter maps using CNNs also comes with the computational benefits of only needing to generate and train a single network instead of multiple networks for each parameter type. Post-stroke outcome prediction metrics do not appreciably change when using images generated from this proposed technique. Over three test participants, the predicted stroke functional outcome scores were within 1-6% of the clinical evaluations. CONCLUSIONS: Estimates of NODDI and GFA parameters estimated simultaneously with a deep learning network from highly undersampled q-space data were improved compared to other state-of-the-art methods providing a 10-fold reduction scan time compared to conventional methods.
PURPOSE: To develop a robust multidimensional deep-learning based method to simultaneously generate accurate neurite orientation dispersion and density imaging (NODDI) and generalized fractional anisotropy (GFA) parameter maps from undersampled q-space datasets for use in stroke imaging. METHODS: Traditional diffusion spectrum imaging (DSI) capable of producing accurate NODDI and GFA parameter maps requires hundreds of q-space samples which renders the scan time clinically untenable. A convolutional neural network (CNN) was trained to generated NODDI and GFA parameter maps simultaneously from 10× undersampled q-space data. A total of 48 DSI scans from 15 strokepatients and 14 normal subjects were acquired for training, validating, and testing this method. The proposed network was compared to previously proposed voxel-wise machine learning based approaches for q-space imaging. Network-generated images were used to predict stroke functional outcome measures. RESULTS: The proposed network achieves significant performance advantages compared to previously proposed machine learning approaches, showing significant improvements across image quality metrics. Generating these parameter maps using CNNs also comes with the computational benefits of only needing to generate and train a single network instead of multiple networks for each parameter type. Post-stroke outcome prediction metrics do not appreciably change when using images generated from this proposed technique. Over three test participants, the predicted stroke functional outcome scores were within 1-6% of the clinical evaluations. CONCLUSIONS: Estimates of NODDI and GFA parameters estimated simultaneously with a deep learning network from highly undersampled q-space data were improved compared to other state-of-the-art methods providing a 10-fold reduction scan time compared to conventional methods.
Authors: Davood Karimi; Lana Vasung; Camilo Jaimes; Fedel Machado-Rivas; Shadab Khan; Simon K Warfield; Ali Gholipour Journal: Med Image Anal Date: 2021-06-03 Impact factor: 13.828
Authors: Akshay S Chaudhari; Christopher M Sandino; Elizabeth K Cole; David B Larson; Garry E Gold; Shreyas S Vasanawala; Matthew P Lungren; Brian A Hargreaves; Curtis P Langlotz Journal: J Magn Reson Imaging Date: 2020-08-24 Impact factor: 5.119