| Literature DB >> 30425686 |
Xiaopeng Jing1, Huan Zhou2, Xiaochun Min1, Xing Zhang1, Qing Yang3, Shuaixian Du4, Yirong Li5, Fangyou Yu6, Min Jia7, Yu Zhan8, Yi Zeng8, Bo Yang8, Yunjun Pan9, Binghuai Lu10, Rong Liu2, Ji Zeng1.
Abstract
This study reports the simplified carbapenem inactivation method (sCIM) to detect carbapenemase-producing gram-negative bacilli in a simple and accurate manner. This method is based on the modified carbapenem inactivation method (mCIM) with the improvement of experimental procedures. Instead of incubating the antibiotic disk in the organism culture media, the organism to be tested was smeared directly onto the antibiotic disk in the sCIM. For evaluating the sensitivity and specificity of the method, a total of 196 Enterobacteriaceae, 73 Acinetobacter baumannii, and 158 Pseudomonas aeruginosa isolates were collected. Polymerase chain reaction (PCR) was used to detect the carbapenemase genes. Phenotypic evaluations were performed using both the sCIM and the mCIM. PCR results showed that, of the 196 Enterobacteriaceae strains, 147 expressed the carbapenemase genes blaKPC-2 (58.5%), blaIMP-4 (21.8%), blaIMP-2 (2.0%), blaVIM-1 (6.1%), blaNDM-1 (10.2%), and blaOXA-48 (1.4%). sCIM results had high concordance with PCR results (99.5%) and mCIM results (100%) with the exception of one Klebsiella pneumoniae strain, which had an minimal inhibitory concentration (MIC) for imipenem of 0.25 mg/L. PCR demonstrated that 53 of the 73 A. baumannii isolates expressed the carbapenemase genes blaOXA-23 (98.1%) and blaVIM-2 (1.8%). sCIM and PCR results corresponded but all A. baumannii isolates were carbapenemase negative by the mCIM. PCR demonstrated that 25 of the 158 P. aeruginosa isolates expressed carbapenemase genes blaVIM-1 (52%) , blaVIM-2 (8%) , blaVIM-4 (36%), and blaIMP-4 (4%). sCIM results had high concordance with PCR results (100%) and the mCIM results (99.4%) with the exception of one P. aeruginosa isolate that expressed the blaVIM-4 gene. The sCIM offers specificity and sensitivity comparable to PCR but has the advantage of being more user-friendly. This method is suitable for routine use in most clinical microbiology laboratories for the detection of carbapenemase-producing gram-negative bacilli.Entities:
Keywords: Enterobacteriaceae; carbapenemase; gram-negative bacilli; modified carbapenem inactivation method; simplified carbapenem inactivation method
Year: 2018 PMID: 30425686 PMCID: PMC6218411 DOI: 10.3389/fmicb.2018.02391
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
FIGURE 1The sCIM testing procedure. Bacteria to be tested were grown overnight on a blood agar plate. One to three overnight colonies were smeared onto an imipenem disk and the disk was then placed on the testing plate.
FIGURE 2Results of sCIM testing of gram-negative bacilli. The zones of inhibition of the negative isolate and the control were similar, whereas the zones of inhibition of the positive isolates (the left is a K. pneumonia producing KPC-2; the right is an E. coli producing NDM-1) were 6 mm.
FIGURE 3Results of sCIM testing of gram-negative bacilli. Positive isolates (the left is a P. aeruginosa producing VIM-4; the right is an A. baumannii producing OXA-23) demonstrate satellite growth within the zone of inhibition around the disk.
Primers for the detection of carbapenemase-producing Enterobacteriaceae.
| Carbapenemase gene | Primer sequencesa | Amplicon size (bp) | Reference |
|---|---|---|---|
| 5′-TGTCACTGTATCGCCGTC-3′ | 1010 | ||
| 5′-CTCAGTGCTCTACAGAAAACC-3′ | |||
| 5′-GAAGGCGTTTATGTTCATAC-3′ | 587 | ||
| 5′-GTACGTTTCAAGAGTGATGC-3′ | |||
| 5′-GTTTGGTCGCATATCGCAAC-3′ | 389 | ||
| 5′-AATGCGCAGCACCAGGATAG-3′ | |||
| 5′-GCAGCTTGTCGGCCATGCGGGC-3′ | 782 | ||
| 5′-GGTCGCGAAGCTGAGCACCGCAT-3′ | |||
| 5′-GCGTGGTTAAGGATGAACAC-3′ | 438 | ||
| 5′-CATCAAGTTCAACCCAACCG-3′ | |||
| 5′-GATCGGATTGGAGAACCAGA-3′ | 501 | ||
| 5′-ATTTCTGACCGCATTTCCAT-3′ |
Laboratory detection of 196 Enterobacteriaceae isolates.
| PCR (n) | MIC of imipenem (mg/L) | MIC of meropenem (mg/L) | MIC of ertapenem (mg/L) | sCIM | mCIM | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ≥4 | 2 | ≤1 | ≥4 | 2 | ≤1 | ≥2 | 1 | ≤0.5 | + | − | + | − | ||
| KPC-2 (54) | 54 | 0 | 0 | 54 | 0 | 0 | 54 | 0 | 0 | 54 | 0 | 54 | 0 | |
| IMP-4 (19) | 19 | 0 | 0 | 19 | 0 | 0 | 19 | 0 | 0 | 19 | 0 | 19 | 0 | |
| IMP-2 (1) | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | |
| VIM-1 (6) | 6 | 0 | 0 | 6 | 0 | 0 | 6 | 0 | 0 | 6 | 0 | 6 | 0 | |
| NDM-1 (3) | 3 | 0 | 0 | 3 | 0 | 0 | 3 | 0 | 0 | 3 | 0 | 3 | 0 | |
| OXA-48(1) | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | |
| None (21) | 1 | 0 | 20 | 1 | 0 | 20 | 4 | 0 | 17 | 1 | 20 | 1 | 20 | |
| KPC-2 (31) | 31 | 0 | 0 | 31 | 0 | 0 | 31 | 0 | 0 | 31 | 0 | 31 | 0 | |
| IMP-4 (9) | 9 | 0 | 0 | 9 | 0 | 0 | 9 | 0 | 0 | 9 | 0 | 9 | 0 | |
| IMP-2 (2) | 2 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 2 | 0 | |
| NDM-1 (5) | 5 | 0 | 0 | 5 | 0 | 0 | 5 | 0 | 0 | 5 | 0 | 5 | 0 | |
| OXA-48(1) | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | |
| None (25) | 0 | 0 | 25 | 0 | 0 | 25 | 2 | 0 | 23 | 0 | 25 | 0 | 25 | |
| KPC-2 (1) | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | |
| IMP-4 (4) | 4 | 0 | 0 | 4 | 0 | 0 | 4 | 0 | 0 | 4 | 0 | 4 | 0 | |
| VIM-1 (3) | 3 | 0 | 0 | 3 | 0 | 0 | 3 | 0 | 0 | 3 | 0 | 3 | 0 | |
| NDM-1 (7) | 7 | 0 | 0 | 7 | 0 | 0 | 7 | 0 | 0 | 7 | 0 | 7 | 0 | |
| None (3) | 0 | 0 | 3 | 0 | 0 | 3 | 0 | 0 | 3 | 0 | 3 | 0 | 3 | |
Laboratory detection of carbapenemase-producing A. baumannii and P. aeruginosa.
| Species (n) | PCR (n) | MIC of imipenem (mg/L) | MIC of meropenem(mg/L) | sCIM | mCIM | ||||
|---|---|---|---|---|---|---|---|---|---|
| ≥8 | ≤2 | ≥8 | ≤2 | + | − | + | − | ||
| IMP-4 (1) | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | |
| VIM-1 (13) | 13 | 0 | 13 | 0 | 13 | 0 | 13 | 0 | |
| VIM-2 (2) | 2 | 0 | 2 | 0 | 2 | 0 | 2 | 0 | |
| VIM-4 (9) | 9 | 0 | 9 | 0 | 9 | 0 | 8 | 1 | |
| None (133) | 124 | 9 | 124 | 9 | 0 | 133 | 0 | 133 | |
| OXA-23 (52) | 52 | 0 | 52 | 0 | 52 | 0 | 0 | 52 | |
| VIM-2 (1) | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | |
| None (20) | 0 | 20 | 0 | 20 | 0 | 20 | 0 | 20 | |
Comparison of sCIM and mCIM results for selected strains.
| Strain (n) | Type of carbapenemase | sCIM zone diameter (mm) | mCIM zone diameter (mm) |
|---|---|---|---|
| KPC-2, IMP-4, IMP-2, VIM-1, NDM-1, OXA-48 | 6 | 6 | |
| VIM-1, VIM-2, VIM-4 | 6 | 6−12 | |
| VIM-4 | 21∗ | 22 | |
| IMP-4 | 6 | 6 | |
| OXA-23 | 6−20∗ | 21−24 | |
| VIM-2 | 18∗ | 24 |