| Literature DB >> 30425549 |
Concetta Dagostino1,2, Massimo Allegri2,3,4, Valerio Napolioni5, Simona D'Agnelli1, Elena Bignami1, Antonio Mutti1, Ron Hn van Schaik6.
Abstract
BACKGROUND: Opioids are widely used for chronic low back pain (CLBP); however, it is still unclear how to predict their effectiveness and safety. Codeine, tramadol and oxycodone are metabolized by CYP/CYP450 2D6 (CYP2D6), a highly polymorphic enzyme linked to allele-specific related differences in metabolic activity.Entities:
Keywords: analgesic drugs; codeine; oxycodone; personalized medicine; pharmacogenetics; polymorphisms
Year: 2018 PMID: 30425549 PMCID: PMC6205525 DOI: 10.2147/PGPM.S181334
Source DB: PubMed Journal: Pharmgenomics Pers Med ISSN: 1178-7066
SNPs detected by xTAG CYP2D6 kit along with their frequencies in USA
| *Haplotype | SNPs detected by xTAG CYP2D6 kit v3 | Frequency in the US Caucasian population | Frequency in the African-American population | Predicted enzyme activity | References |
|---|---|---|---|---|---|
|
| |||||
| *1 | none | 37%-40% | 29%-35% | Normal | Kimura et al, 1989 |
| *2 | 1,584C>G, 1,661 G>C, 2,850C>T, 4,180G>C | 26%-33% | 18%-27% | Normal | Johansson et al, 1993 |
| *3 | 2,549A>del | 1.00% | 0.2%-0.6% | None | Kagimoto et al, 19904l Marez et al, 1997 |
| *4 | 100C>T, 1,661G>C, 1,846G>A, 2,850C>T, 4,180G>C | 18%-20% | 6%-9% | None | Gough et al, 1990 |
| *5 | Deletion | 2%-4% | 6%-7% | None | Gaedigk et al, 1991 |
| *6 | 1,707T>del, 4,180G>C | 1% | 0.5% | None | Evert et al, 1994 |
| *7 | 2,935A>C | Not known | Not known | None | Evert et al, 1994 |
| *8 | 1,661G>C, 1,758G>T, | Not known | Not known | None | Broly et al, 199 5 |
| *9 | 2,613delAGA | 2%-3% | 0.3% | Reduced | Tyndale et al, 19915I Broly et al, 1993 |
| *10 | 100C>T, 1,661G>C, | 2%-8% | 0.3%-0.4% | Reduced | Sakuyama et al, 2008 |
| *11 | 883G>C, 1,661G>C, 2,850C>T, 4,180G>C | Not known | Not known | None | Marez et al, 1995 |
| *15 | 138insT | Not known | Not known | None | Sachse et al, 1997 |
| *17 | 1,023C>T, 1,661G>C, 2,850C>T, 4,180G>C | 0.2%-0.3% | 15%-26% | Reduced | Masimirembwa et al, 1996 |
| *29 | 1,659G>A, 1,661G>C, 2,850C>T, 3,183G>A, | Not known | Not known | Reduced | Marez et al, 1997 |
| *35 | 1,584C>G, 31G>A, 1,661G>C, 2,850C>T, | 7.4% | l% | Normal | Marez et al, 1997 |
| *41 | 1,661G>C, 2,850C>T, 2,988G>A, 4,180G>C | 9% | 11% | Reduced | Raimundo et al, 2000 |
Notes: Caucasian and African-American population. The column on the far left reports the expected CYP2D6 enzyme activity for each haplotype.
Abbreviation: SNP, single-nucleotide polymorphism.
Allelic frequency in the Caucasian population
| Genotype or allele | Phenotype | Observed (predicted) frequency (%) | Reference |
|---|---|---|---|
|
| |||
| *1/*1 | WT | 53.3 (55.0) | |
| *1/*3 (*4, *5, *6) | PM | 35.0 (32.7) | |
| *3/*4 *4/*4, *4/*5 | IM | 3.4 (4.2) | |
| *1/*2×2 | UM | 8.3 (8.1) | |
| *1 | WT | 22-32 | Cavallari et al, 2011 |
| *2 | EM | 22 | |
| *4 *5 | PM | 22-28 | |
| *10, *17, *29, *41 | IM | 1-12 | |
| *2 n, *Xn | UM | 1-5 | |
| *1 | WT | 33-37 | |
| *2 | EM | 22-33 | |
| *3, *4, *5, *6 | PM | 15-35 | |
| *9, *10, *17, *41 | IM | 2-16 | |
| N/R | PM | 30-100 | |
| N/R | IM | 10-20 | |
| N/R | UM | 8-43 | |
Notes:
Calculated according to the Hardy–Weinberg equation in Italian population;
reported after a proportional correction of a factor 10 in order to uniform the data;
EU Caucasian.
Abbreviations: EM, extensive metabolizer; IM, intermediate metabolizer; N/R, not reported; PM, poor metabolizer; UM, ultrarapid metabolizer; WT, wild type.
Figure 1Patients chronically treated with codeine or oxycodone for the low back pain in each group selected to investigate the onset of the side effects and lack of benefit.
Demographic and clinical characteristics of the two groups selected during enrollment of Italian volunteers of the retrospective study in the PainOMICS project
| Characteristics of patients | Case (no benefit with side effects) | Control (benefit without side effects) | Total cohort | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| n | M | SD | % | n | M | SD | % | n | M | SD | % | ||
| Age | 68.7 | 13.1 | 66.5 | 14.5 | 6.8 | 14.3 | |||||||
| Sex | Male | 7 | 28.13 | 59 | 34.9 | 66 | 35.1 | ||||||
| Female | 20 | 71.9 | 110 | 65.1 | 130 | 64.9 | |||||||
| Weight (kg) | 73.1 | 14.6 | 74.7 | 14.4 | 74.5 | 14.4 | |||||||
| Height (cm) | 163.5 | 8.5 | 165.9 | 8.9 | 165.5 | 8.8 | |||||||
| BMI | 27.3 | 4.7 | 27.1 | 5 | 27.2 | 4.9 | |||||||
| Smoker | 8 | 29.6 | 46 | 27.2 | 54 | 27.6 | |||||||
| Pain generator | Radiculopathy | 8 | 33.3 | 69 | 41.1 | 77 | 40 | ||||||
| Stenosis | 4 | 13.3 | 11 | 6.3 | 15 | 7.3 | |||||||
| Sacroiliac joint | 4 | 13.3 | 14 | 8.4 | 18 | 9.1 | |||||||
| Widespread Degeneration | 6 | 23.3 | 31 | 18.4 | 37 | 19.1 | |||||||
| Zygapophyseal/facet joint | 5 | 16.7 | 44 | 25.8 | 49 | 24.5 | |||||||
| Pathophysiology of pain | Spinal stenosis | 12.9 | 4.7 | 5.9 | |||||||||
| Facet joint pain | 16.1 | 25.8 | 24.4 | ||||||||||
| Sacroiliac joint pain | 12.9 | 8.9 | 9.5 | ||||||||||
| Radicular pain | 35.5 | 42.6 | 41.6 | ||||||||||
| Widespread pain | 22.6 | 17.9 | 18.6 | ||||||||||
| Total score of pain detected | 12.6 | 6.2 | 12.6 | 7.2 | 12.6 | 7 | |||||||
| Opioid | Codeine | 10 | 37 | 87 | 51.5 | 97 | 49.5 | ||||||
| Oxycodone | 17 | 63 | 82 | 48.5 | 99 | 50.5 | |||||||
| Other drugs | No | 87.1 | 82.8 | 83.4 | |||||||||
| Yes | 12.9 | 17.2 | 16.6 | ||||||||||
Abbreviation: BMI, body mass index.
Figure 2Phenotype of patients (in percentage) chronically treated with opioids for the low back pain and split into two groups (Case = side effects without benefit; Control = benefit without side effects) in order to investigate the pharmacokinetics of codeine and oxycodone excluding DDI issues.
Abbreviations: CLBP, chronic low back pain; DDI, drug–drug interaction; EM, extensive metabolizer; IM, intermediate metabolizer; PM, poor metabolizer; UM, ultrarapid metabolizer.
Distribution of CYP2D6 metabolizer phenotypes in the two groups studied according to sex
| WT/EM | IM/PM | UM | Total | |
|---|---|---|---|---|
|
| ||||
| 66 | ||||
| Case | 6 (85.7%) | – | 1 (14.3%) | 7 |
| Control | 49 (83.1%) | 10 (17.0%) | 59 | |
|
| ||||
| 6 | ||||
| Case | 15 (75.0%) | 4 (20.0%) | 1 (5.0%) | 20 |
| Control | 86 (78.2%) | 19 (17.3%) | 5 (4.6%) | 110 |
|
| ||||
Note: No significant differences between sexes were found (Case, Fisher’s exact test P=0.304; Control, Fisher’s exact test P=0.302).
Abbreviations: EM, extensive metabolizer; IM, intermediate metabolizer; PM, poor metabolizer; UM, ultrarapid metabolizer.
CYP2D6 haplotype distribution in the two groups studied (Case and Control) and their association with the no benefit/benefit status
| Allele | Case (frequency) | Control (frequency) | OR | 95% Lo | 95% Hi | χ2 | P-value | Common (frequency >1%) |
|---|---|---|---|---|---|---|---|---|
|
| ||||||||
| 20 (37%) | 129 (38%) | 0.092 | 0.761 | + | ||||
| 7 (13%) | 0.730 | 0.291 | 1.831 | 1.157 | 0.282 | + | ||
| 9 (17%) | 61 (18%) | 0.973 | 0.415 | 2.282 | 0.077 | 0.782 | + | |
| *41 | 38 (11%) | 1.045 | 0.387 | 2.817 | 0.971 | + | ||
| *35 | 3 ( | 0.921 | 0.248 | 3.429 | 0.040 | 0.841 | + | |
| *5 | 0.678 | 0.079 | 5.829 | 0.159 | 0.690 | + | ||
| 3 ( | 4 (1%) | + | ||||||
| 4 (1%) | 0.744 | 0.389 | ||||||
| *2N | 2 (4%) | 3 (1%) | 4.795 | 0.710 | 32.380 | 3.142 | 0.076 | + |
| *1N | ||||||||
| 3 ( | + | |||||||
| *15 | ||||||||
| *35 | ||||||||
CYP2D6 diplotype distribution in the two groups (Case and Control) evaluated and their association with the status “no benefit or benefit” and “side effects or not”
| Genotype | Case (frequency) | Control (frequency) | OR | 95% Lo | 95% Hi | χ2 | P-value | Common (frequency >1%) |
|---|---|---|---|---|---|---|---|---|
|
| ||||||||
| * | 5 (19%) | 28 (17%) | 1.682e-05 | 0.997 | + | |||
| *1/*4 | 3.757 | 0.053 | + | |||||
| * | 2 (7%) | 24 (14%) | 0.4782 | 0.08255 | 2.771 | 1.023 | 0.312 | + |
| *1/*41 | 1 (4%) | 12 (7%) | 0.5818 | 0.05916 | 5.721 | 0.3729 | 0.541 | + |
| *1/*35 | 1 (4%) | 9 (5%) | 0.6507 | 0.06512 | 6.503 | 0.1576 | 0.691 | + |
| *1/*5 | 1 (4%) | 0.2018 | 41.33 | 0.6081 | 0.436 | + | ||
| *1/*9 | 2 (7%) | 6.921 | 0.6521 | 73.46 | 2.734 | 0.098 | + | |
| *1/*2N | 1 (4%) | 2.236 | 0.1576 | 31.73 | 0.7267 | 0.394 | + | |
| * | ||||||||
| 2 (7%) | + | |||||||
| *4/*4 | 1 (4%) | 0.7348 | 0.07269 | 7.428 | 0.1092 | 0.741 | + | |
| *2/*4 | 3 (11%) | 12 (7%) | 1.91 | 0.3676 | 9.93 | 0.5443 | 0.461 | + |
| *4/*41 | 1 (4%) | 0.5659 | 0.05744 | 5.575 | 0.2826 | 0.595 | + | |
| *4/*35 | 4 (2%) | 0.6435 | 0.422 | + | ||||
| *4/*5 | ||||||||
| *4/*10 | ||||||||
| 1 (4%) | 2.239 | + | ||||||
| * | 1 (4%) | 7 (4%) | 0.8332 | 0.08038 | 8.636 | 0.08367 | 0.772 | + |
| *2/*41 | 2 (7%) | 7 (4%) | 1.729 | 0.2649 | 11.29 | 0.4101 | 0.522 | + |
| *2/*9 | 8.357e-07 | 8.357e-07 | 8.357e-07 | |||||
| * | ||||||||
| *2/*9 | ||||||||
| *2/*15 | ||||||||
| *41/*41 | ||||||||
| *41/*35 | 3 (2%) | 0.5801 | 0.446 | + | ||||
| *41/*5 | 0.3935 | 0.531 | + | |||||
| *41/*9 | 1 (4%) | 9.136 | 0.3764 | 2.495 | 0.114 | + | ||
| 1 (4%) | + | |||||||
| *41/*^ | ||||||||
| *35/*35 | 1 (4%) | 3.485 | 0.1627 | 74.63 | 0.346 | + | ||
| *5/*35 | ||||||||
| *35/*3 | ||||||||
| *5/*10 | 0.4365 | 0.509 | + | |||||
Notes: The significant results are reported in bold and shading.
Figure 3Cartoon to summarize the results.
Notes: The alleles *6 and *9 seem to be mainly responsible for the lack of therapeutic effect during chronic treatment with opioids. *2N is responsible of side effects.
Abbreviations: IM, intermediate metabolizer; PM, poor metabolizer; UM, ultrarapid metabolizer.
Phenotypes set for the various combinations of CYP2D6 alleles detected by xTAG CYP2D6 Kit v3
| *1 | *2 | *3 | *4 | *5 | *6 | *7 | *8 | *9 | *10 | *11 | *15 | *17 | *29 | *35 | *41 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| *1 | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM |
| *2 | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | EM | |
| *3 | PM | PM | PM | PM | PM | PM | IM | IM | PM | PM | IM | IM | EM | IM | ||
| *4 | PM | PM | PM | PM | PM | IM | IM | PM | PM | IM | IM | EM | IM | |||
| *5 | PM | PM | PM | PM | IM | IM | PM | PM | IM | IM | EM | IM | ||||
| *6 | PM | PM | PM | IM | IM | PM | PM | IM | IM | EM | IM | |||||
| *7 | PM | PM | IM | IM | PM | PM | IM | IM | EM | IM | ||||||
| *8 | PM | IM | IM | PM | PM | IM | IM | EM | IM | |||||||
| *9 | IM | IM | IM | IM | IM | IM | EM | IM | ||||||||
| *10 | IM | IM | IM | IM | IM | EM | IM | |||||||||
| *11 | PM | PM | IM | IM | EM | IM | ||||||||||
| *15 | PM | IM | IM | EM | IM | |||||||||||
| *17 | IM | IM | EM | IM | ||||||||||||
| *29 | IM | EM | IM | |||||||||||||
| *35 | EM | EM | ||||||||||||||
| *41 | IM |
Abbreviations: EM, extensive metabolizer; IM, intermediate metabolizer; PM, poor metabolizer.