Literature DB >> 30419516

From next generation sequencing to now generation sequencing in forensics.

Peter de Knijff1.   

Abstract

In contrast to genetic diagnostic disciplines such as Oncogenetics and Cinical Genetics, where worldwide, since 2010, tens of thousands of DNA samples are routinely screened annually using either targeted genome sequencing or whole genome sequencing using massively parallel sequencing (MPS), the forensic use of MPS is still far from being a routine diagnostic tool. This perspectives focusses on issues that are essential in order to fully understand (i) why MPS of short tandem repeats (STRs) is very different from the capillary electrophoresis (CE) based genotyping of STRs, (ii) what we, DNA experts, should know before explaining MPS-based evidence in court, and (iii) what information should be present in a forensic investigation report that is MPS-based. Here one has to keep in mind that the forensic use of CE was first introduced in 1992-1993 and that it took some time to fully appreciate all intricacies. Obviously, I might be biased in my opinion, having worked on this topic since 2008, but I sincerely hope that MPS will soon be widely accepted and used because, especially in case of mixed-source DNA samples, MPS is much better in the deconvolution of the individual contributors and invariably reveals genetic information that cannot be inferred otherwise.
Copyright © 2018. Published by Elsevier B.V.

Entities:  

Keywords:  Massively parallel sequencing (MPS); Next generation seqeuncing (NGS); Short tandem repeat (STR)

Mesh:

Year:  2018        PMID: 30419516     DOI: 10.1016/j.fsigen.2018.10.017

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  11 in total

1.  Development and validation of a novel 133-plex forensic STR panel (52 STRs and 81 Y-STRs) using single-end 400 bp massive parallel sequencing.

Authors:  Haoliang Fan; Lingxiang Wang; Changhui Liu; Xiaoyu Lu; Xuding Xu; Kai Ru; Pingming Qiu; Chao Liu; Shao-Qing Wen
Journal:  Int J Legal Med       Date:  2021-11-06       Impact factor: 2.791

2.  Detection and analysis of the cause of false-tetra-allelic patterns of locus D10S1435 at the sequence level.

Authors:  Yongsong Zhou; Qiong Lan; Yating Fang; Yuxin Guo; Tong Xie; Weian Du; Bofeng Zhu
Journal:  Int J Legal Med       Date:  2019-09-13       Impact factor: 2.686

3.  Progress in the implementation of massively parallel sequencing for forensic genetics: results of a European-wide survey among professional users.

Authors:  Theresa E Gross; Jan Fleckhaus; Peter M Schneider
Journal:  Int J Legal Med       Date:  2021-04-13       Impact factor: 2.686

Review 4.  PCR inhibition in qPCR, dPCR and MPS-mechanisms and solutions.

Authors:  Maja Sidstedt; Peter Rådström; Johannes Hedman
Journal:  Anal Bioanal Chem       Date:  2020-02-12       Impact factor: 4.142

5.  Blood group typing from whole-genome sequencing data.

Authors:  Julien Paganini; Peter L Nagy; Nicholas Rouse; Philippe Gouret; Jacques Chiaroni; Chistophe Picard; Julie Di Cristofaro
Journal:  PLoS One       Date:  2020-11-12       Impact factor: 3.240

Review 6.  Interpol review of forensic biology and forensic DNA typing 2016-2019.

Authors:  John M Butler; Sheila Willis
Journal:  Forensic Sci Int       Date:  2020-02-20       Impact factor: 2.395

7.  A worldwide map of swine short tandem repeats and their associations with evolutionary and environmental adaptations.

Authors:  Zhongzi Wu; Huanfa Gong; Mingpeng Zhang; Xinkai Tong; Huashui Ai; Shijun Xiao; Miguel Perez-Enciso; Bin Yang; Lusheng Huang
Journal:  Genet Sel Evol       Date:  2021-04-23       Impact factor: 4.297

8.  Sequence variations, flanking region mutations, and allele frequency at 31 autosomal STRs in the central Indian population by next generation sequencing (NGS).

Authors:  Hirak Ranjan Dash; Kamlesh Kaitholia; R K Kumawat; Anil Kumar Singh; Pankaj Shrivastava; Gyaneshwer Chaubey; Surajit Das
Journal:  Sci Rep       Date:  2021-12-01       Impact factor: 4.379

9.  CSYseq: The first Y-chromosome sequencing tool typing a large number of Y-SNPs and Y-STRs to unravel worldwide human population genetics.

Authors:  Sofie Claerhout; Paulien Verstraete; Liesbeth Warnez; Simon Vanpaemel; Maarten Larmuseau; Ronny Decorte
Journal:  PLoS Genet       Date:  2021-09-07       Impact factor: 5.917

10.  Ancestry Prediction Comparisons of Different AISNPs for Five Continental Populations and Population Structure Dissection of the Xinjiang Hui Group via a Self-Developed Panel.

Authors:  Xiao-Ye Jin; Yu-Xin Guo; Chong Chen; Wei Cui; Yan-Fang Liu; Yun-Chun Tai; Bo-Feng Zhu
Journal:  Genes (Basel)       Date:  2020-05-04       Impact factor: 4.096

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