Literature DB >> 30416320

ComClus: A Self-Grouping Framework for Multi-Network Clustering.

Jingchao Ni1, Wei Cheng2, Wei Fan3, Xiang Zhang1.   

Abstract

Joint clustering of multiple networks has been shown to be more accurate than performing clustering on individual networks separately. This is because multi-network clustering algorithms typically assume there is a common clustering structure shared by all networks, and different networks can provide compatible and complementary information for uncovering this underlying clustering structure. However, this assumption is too strict to hold in many emerging applications, where multiple networks usually have diverse data distributions. More popularly, the networks in consideration belong to different underlying groups. Only networks in the same underlying group share similar clustering structures. Better clustering performance can be achieved by considering such groups differently. As a result, an ideal method should be able to automatically detect network groups so that networks in the same group share a common clustering structure. To address this problem, we propose a new method, ComClus, to simultaneously group and cluster multiple networks. ComClus is novel in combining the clustering approach of non-negative matrix factorization (NMF) and the feature subspace learning approach of metric learning. Specifically, it treats node clusters as features of networks and learns proper subspaces from such features to differentiate different network groups. During the learning process, the two procedures of network grouping and clustering are coupled and mutually enhanced. Moreover, ComClus can effectively leverage prior knowledge on how to group networks such that network grouping can be conducted in a semi-supervised manner. This will enable users to guide the grouping process using domain knowledge so that network clustering accuracy can be further boosted. Extensive experimental evaluations on a variety of synthetic and real datasets demonstrate the effectiveness and scalability of the proposed method.

Entities:  

Keywords:  Multi-Network Clustering; Network Grouping; Non-Negative Matrix Factorization

Year:  2017        PMID: 30416320      PMCID: PMC6221474          DOI: 10.1109/TKDE.2017.2771762

Source DB:  PubMed          Journal:  IEEE Trans Knowl Data Eng        ISSN: 1041-4347            Impact factor:   6.977


  8 in total

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3.  Nova regulates brain-specific splicing to shape the synapse.

Authors:  Jernej Ule; Aljaz Ule; Joanna Spencer; Alan Williams; Jing-Shan Hu; Melissa Cline; Hui Wang; Tyson Clark; Claire Fraser; Matteo Ruggiu; Barry R Zeeberg; David Kane; John N Weinstein; John Blume; Robert B Darnell
Journal:  Nat Genet       Date:  2005-07-24       Impact factor: 38.330

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Authors:  Nathan Eagle; Alex Sandy Pentland; David Lazer
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-17       Impact factor: 11.205

6.  Robust Multi-Network Clustering via Joint Cross-Domain Cluster Alignment.

Authors:  Rui Liu; Wei Cheng; Hanghang Tong; Wei Wang; Xiang Zhang
Journal:  Proc IEEE Int Conf Data Min       Date:  2015-11

7.  A global map of human gene expression.

Authors:  Margus Lukk; Misha Kapushesky; Janne Nikkilä; Helen Parkinson; Angela Goncalves; Wolfgang Huber; Esko Ukkonen; Alvis Brazma
Journal:  Nat Biotechnol       Date:  2010-04       Impact factor: 54.908

8.  Tissue specificity and the human protein interaction network.

Authors:  Alice Bossi; Ben Lehner
Journal:  Mol Syst Biol       Date:  2009-04-07       Impact factor: 11.429

  8 in total

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