Literature DB >> 3041372

Effects of macromolecular crowding on the association of E. coli ribosomal particles.

S B Zimmerman1, S O Trach.   

Abstract

The equilibrium for the binding reaction between the 30 S and 50 S ribosomal subunits of E. coli is shifted towards formation of 70 S ribosomes in the presence of a variety of polymers. The polymers also increase a further interaction between 70 S particles to form the 100 S dimer. The requirement for relatively high concentrations of non-specific polymers indicates that the shifts in equilibria arise from excluded volume effects. Analysis using scaled particle theory is consistent with this mechanism. The effects of high concentrations of polymers on the interactions between ribosomal species may make important changes in the function of ribosomes under the crowded conditions which occur in vivo.

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Year:  1988        PMID: 3041372      PMCID: PMC338297          DOI: 10.1093/nar/16.14.6309

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  34 in total

1.  Analysis of non-ideal behavior in concentrated hemoglobin solutions.

Authors:  P D Ross; A P Minton
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Review 2.  Studies on the ribosome and its components.

Authors:  P Spitnik-Elson; D Elson
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1976

3.  Magnesium dependence and equilibrium of the Escherichia coli ribosomal subunit association.

Authors:  R S Zitomer; J G Flaks
Journal:  J Mol Biol       Date:  1972-11-14       Impact factor: 5.469

4.  Structural dynamics of bacterial ribosomes. II. Preparation and characterization of ribosomes and subunits active in the translation of natural messenger RNA.

Authors:  M Noll; B Hapke; H Noll
Journal:  J Mol Biol       Date:  1973-11-05       Impact factor: 5.469

5.  Different species of 70S ribosomes of Escherichia coli and their dissociation into subunits.

Authors:  J van Duin; G VAN Dieijen; G Dieijen; P H van Knippenberg; L Bosch
Journal:  Eur J Biochem       Date:  1970-12

6.  Pressure-induced dissociation of sedimenting ribosomes: effect on sedimentation patterns.

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Journal:  Proc Natl Acad Sci U S A       Date:  1971-08       Impact factor: 11.205

7.  The effect of volume occupancy upon the thermodynamic activity of proteins: some biochemical consequences.

Authors:  A P Minton
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Review 9.  Enzymes under extremes of physical conditions.

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10.  A new staining technique for proteins in polyacrylamide gels using coomassie brilliant blue G250.

Authors:  R W Blakesley; J A Boezi
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  19 in total

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Review 8.  Influence of crowded cellular environments on protein folding, binding, and oligomerization: biological consequences and potentials of atomistic modeling.

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10.  Isolation of cell nuclei using inert macromolecules to mimic the crowded cytoplasm.

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