Literature DB >> 1413262

Substrate preparation for reliable imaging of DNA molecules with the scanning force microscope.

J Vesenka1, M Guthold, C L Tang, D Keller, E Delaine, C Bustamante.   

Abstract

A simple method of substrate preparation for imaging circular DNA molecules with the scanning force microscope (SFM) is presented. These biomolecules are adsorbed onto mica that has been soaked in magnesium acetate, sonicated and glow-discharged. The stylus-sample forces that may be endured before sample damage occurs depends on the ambient relative humidity. Images of circular DNA molecules have been obtained routinely using tips specially modified by an electron beam with a radius of curvature, Rc, of about 10 nm [D. Keller and C. Chih-Chung, Surf. Sci. 268 (1992) 333]. The resolution of these adsorbed biomolecules is determined by the Rc. At higher forces individual circular DNA molecules can be manipulated with the SFM stylus. Strategies to develop still sharper probes will be discussed.

Entities:  

Mesh:

Substances:

Year:  1992        PMID: 1413262     DOI: 10.1016/0304-3991(92)90430-r

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  50 in total

1.  Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase.

Authors:  M Guthold; X Zhu; C Rivetti; G Yang; N H Thomson; S Kasas; H G Hansma; B Smith; P K Hansma; C Bustamante
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Monte Carlo simulations of supercoiled DNAs confined to a plane.

Authors:  Bryant S Fujimoto; J Michael Schurr
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

Review 3.  Stretching and imaging single DNA molecules and chromatin.

Authors:  Jordanka Zlatanova; Sanford H Leuba
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

4.  Concentration effect on the aggregation of a self-assembling oligopeptide.

Authors:  S Y Fung; C Keyes; J Duhamel; P Chen
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

5.  Preparation of Mica and Silicon Substrates for DNA Origami Analysis and Experimentation.

Authors:  Michelle A Pillers; Rebecca Shute; Adam Farchone; Keenan P Linder; Rose Doerfler; Corey Gavin; Valerie Goss; Marya Lieberman
Journal:  J Vis Exp       Date:  2015-07-23       Impact factor: 1.355

6.  Attaching molecules to surfaces for scanning probe microscopy.

Authors:  D Keller; C Bustamante
Journal:  Biophys J       Date:  1993-03       Impact factor: 4.033

7.  Single-molecule analysis of proteinxDNA complexes formed during partition of newly replicated plasmid molecules in Streptococcus pyogenes.

Authors:  Florencia Pratto; Yuki Suzuki; Kunio Takeyasu; Juan C Alonso
Journal:  J Biol Chem       Date:  2009-09-02       Impact factor: 5.157

Review 8.  Imaging of DNA and Protein-DNA Complexes with Atomic Force Microscopy.

Authors:  Yuri L Lyubchenko; Luda S Shlyakhtenko
Journal:  Crit Rev Eukaryot Gene Expr       Date:  2016       Impact factor: 1.807

9.  Scanning force microscopy of circular and linear plasmid DNA spread on mica with a quaternary ammonium salt.

Authors:  A Schaper; L I Pietrasanta; T M Jovin
Journal:  Nucleic Acids Res       Date:  1993-12-25       Impact factor: 16.971

10.  Visualization of trp repressor and its complexes with DNA by atomic force microscopy.

Authors:  E Margeat; C Le Grimellec; C A Royer
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.