| Literature DB >> 30406448 |
Maruška Čuš1, Veljko Vlaisavljević2, Katja Repnik3,4, Uroš Potočnik3,4, Borut Kovačič5.
Abstract
PURPOSE: The aim of this study was to investigate whether single nucleotide polymorphisms (SNPs) in selected genes, responsible for hormonal regulation of folliculogenesis, are associated with response to controlled ovarian hyperstimulation (COH) and clinical characteristics of women enrolled in in vitro fertilization (IVF) programs.Entities:
Keywords: AMHR; Controlled ovarian hyperstimulation; FSHR; Genotyping; Single nucleotide polymorphisms
Mesh:
Substances:
Year: 2018 PMID: 30406448 PMCID: PMC6338606 DOI: 10.1007/s10815-018-1357-4
Source DB: PubMed Journal: J Assist Reprod Genet ISSN: 1058-0468 Impact factor: 3.412
Forward and reverse primer sequences, primer concentrations, and annealing temperatures
| Gene | SNP ID | Variation | Region | Forward and reverse primer | Annealing temperature (°C) | Primer concentration (nM) | Genotyping method |
|---|---|---|---|---|---|---|---|
|
| rs1394205 | -29G/A | Non-coding | AGCTTCTGAGATCTGTGGAGG | 62 | 300 | HRM |
| AGCAAAGAGACCAGGAGCAG | |||||||
| rs6166 | Asn680Ser | Coding | CTTCAGCTCCCAGAGTCACC | 62 | 300 | HRM | |
| CATTGTGTTTTAGTTTTGGGCTAA | |||||||
|
| rs3741664 | 4952G/A | Non-coding | CGTCTCCAGCTTTGTGTACC | 62 | 400 | HRM |
| GTCACTGGTGTACTGGGTCA | |||||||
|
| rs2234693 | PvuII T/C | Coding | TGTTCTGTGTTGTCCATCAGT | 62 | 400 | HRM |
| CTCTAGACCACACTCAGGGT | |||||||
|
| rs10407022 | Ile49Ser | Coding | TCCGAGAAGACTTGGACTGG | 62 | 300 | HRM |
| AGCTGCTGCCATTGCTGT |
Notes
HRM high resolution melting
Main characteristic of study participants and analyzed parameters
| All participants | Poor responders | Normo responders | Hyper responders | ||||
|---|---|---|---|---|---|---|---|
| Poor vs. normo | Normo vs. hyper | Poor vs hyper | |||||
| No. | 60 | 17 | 26 | 17 | |||
| Age (years) | 32.72 ± 0.66 | 34.92 ± 0.76 | 32.50 ± 1.15 | 30.85 ± 1.11 |
| 0.067 |
|
| BMI (kg/m2) | 24.72 ± 0.82 | 23.76 ± 1.17 | 25.90 ± 1.32 | 23.87 ± 1.71 | 0.808 | 0.475 | 0.648 |
| bFSH (mIU/mL) | 6.66 ± 0.49 | 9.42 ± 1.37 | 5.59 ± 0.31 | 5.55 ± 0.43 |
| 0.322 |
|
| AMH (ng/mL) | 3.55 ± 0.54 | 0.46 ± 0.10 | 3.94 ± 0.80 | 6.05 ± 0.96 |
|
|
|
| Estradiol on hCG day (pmol/L) | 4.99 ± 0.62 | 2.82 ± 0.81 | 3.96 ± 0.57 | 8.75 ± 1.41 | 0.078 |
|
|
| No. of follicles punctured | 12.44 ± 1.40 | 3.77 ± 1.00 | 10.57 ± 1.17 | 23.69 ± 2.19 |
|
|
|
| Oocytes retrieved | 10.72 ± 1.16 | 3.54 ± 0.94 | 8.90 ± 0.70 | 20.69 ± 1.65 |
|
|
|
| rFSH (IU) | 1855.44 ± 127.83 | 2688.46 ± 299.56 | 1631.25 ± 91.35 | 1367.31 ± 150.99 |
| 0.056 |
|
| rFSH (IU) per oocyte | 462.99 ± 115.84 | 1233.52 ± 325.65 | 217.56 ± 27.60 | 70.05 ± 10.38 |
|
|
|
Notes: P < 0.05 was considered statistically significant. Statistically significant values are written in bold
BMI body mass index, bFSH basal follicle-stimulating hormone, AMH basal anti-Müllerian hormone, hCG human chorionic gonadotropin, rFSH recombinant follicle-stimulating hormone, IU international units
P is from t-test
Associations between selected SNPs and response to hormonal regulated folliculogenesis
| Gene/SNP ID | Genotype/allele | All participants | Poor responders | Normo responders | Hyper responders | |
|---|---|---|---|---|---|---|
| TT | ( | ( | ( | ( | ||
| GT | ( | ( | ( | ( | ||
| GG | ( | ( | ( | ( | ||
| T | 0.845 | 0.882 | 0.820 | 0.844 | ||
| G | 0.155 | 0.118 | 0.180 | 0.156 | ||
| Statistical analysis | Poor vs. normo | Normo vs. hyper | Poor vs. hyper | TT vs. GT+GG | ||
| 1.000 | 0.723 | 0.708 | ||||
| 1.026 | 1.439 | 1.477 | OR | |||
| 0.241–4.369 | 0.355–5.837 | 0.317–6.895 | 95% CI | |||
| 0.586 | 0.946 | 0.648 | T vs. G | |||
| 1.429 | 0.972 | 1.389 | OR | |||
| 0.394–5.182 | 0.288–3.285 | 0.338–5.711 | 95% CI | |||
| AA | ( | ( | ( | ( | ||
| AG | ( | ( | ( | ( | ||
| GG | ( | ( | ( | ( | ||
|
| 0.158 | 0.088 | 0.200 | 0.167 | ||
|
| 0.842 | 0.912 | 0.800 | 0.833 | ||
| Statistical analysis | Poor vs. normo | Normo vs. hyper | Poor vs. hyper | |||
| 0.190 | 0.729 | 0.671 | AG vs. GG | |||
| 0.321 | 1.667 | 0.536 | OR | |||
| 0.073–1.414 | 0.407–6.818 | 0.098–2.941 | 95% CI | |||
| 0.181 | 0.528 | 0.526 | A vs. G | |||
| 0.400 | 1.500 | 0.600 | OR | |||
| 0.101–1.581 | 0.423–5.315 | 0.122–2.943 | 95% CI | |||
| AA | ( | ( | ( | ( | ||
| AG | ( | ( | ( | ( | ||
| GG | ( | ( | ( | ( | ||
| A | 0.339 | 0.118 | 0.462 | 0.375 | ||
| G | 0.661 | 0,882 | 0.538 | 0.625 | ||
| Statistical analysis | Poor vs. normo | Normo vs. hyper | Poor vs. hyper | |||
| 0.139 | 1.000 | 0.103 | AA vs. AG+GG | |||
| 1.810 | 1.032 | 2.308 | OR | |||
| 1.59–2.409 | 0.210–5.058 | 1.533–3.475 | 95% CI | |||
| 0.080 | 0.322 |
| AA+AG vs.GG | |||
| 0.113 | 2.111 | 0.239 | OR | |||
| 0.027–.467 | 0.567–7.855 | 0.054–1.066 | 95% CI | |||
|
| 0.436 |
| A vs. G | |||
| 0.156 | 1.429 | 0.222 | OR | |||
| 0.048–0.505 | 0.581–3.513 | 0.063–0.787 | 95% CI | |||
| AA | ( | ( | ( | ( | ||
| AG | ( | ( | ( | ( | ||
| GG | ( | ( | ( | ( | ||
| A | 0.567 | 0.618 | 0.596 | 0.471 | ||
| G | 0.433 | 0.382 | 0.404 | 0.529 | ||
| Statistical analysis | Poor vs normo | Normo vs hyper | Poor vs hyper | |||
| 0.528 | 0.740 | 0.465 | AA vs AG+GG | |||
| 1.575 | 1.333 | 2.100 | OR | |||
| 0.440–5.638 | 0.327–5.434 | 0.474–9.297 | 95% CI | |||
| 1.000 | 0.465 | 0.438 | AA+AG vs.GG | |||
| 1.111 | 1.909 | 2.121 | OR | |||
| 0.228–5.411 | 0.453–8.044 | 0.414–10.87 | 95% CI | |||
| 0.582 | 0.428 | 0.225 | A vs. G | |||
| 1.282 | 1.429 | 1.831 | OR | |||
| 0.530–3.005 | 0.590–3.459 | 0.687–4.878 | 95% CI | |||
| CC | ( | ( | ( | ( | ||
| CT | ( | ( | ( | ( | ||
| TT | ( | ( | ( | ( | ||
| C | 0.467 | 0.471 | 0.500 | 0.412 | ||
| T | 0.533 | 0.529 | 0.500 | 0.588 | ||
| Statistical analysis | Poor vs normo | Normo vs hyper | Poor vs hyper | |||
| 0.92 | 1.000 | 1.000 | CC vs. CT+TT | |||
| 1.692 | 0.788 | 1.333 | OR | |||
| 0.361–7.943 | 0.152–4.088 | 0.248–7.174 | 95% CI | |||
| 0.481 | 0.465 | 1.000 | CC + CT vs. TT | |||
| 0.571 | 1.909 | 1.01 | OR | |||
| 0.137–2.384 | 0.453–8.044 | 0.247–4.817 | 95% CI | |||
| 0.926 | 0.699 | 0.787 | C vs. T | |||
| 0.960 | 1.190 | 1.143 | OR | |||
| 0.404–2.282 | 0.491–2.885 | 3.015–0.433 | 95% CI | |||
Notes
P is from Fisher exact test
Statistically significant associations between selected SNPs and patients’ baseline hormonal values and rFSH dose used for ovarian hyperstimulation
| Gene | SNP | Characteristic | Genotype | Median (interquartile range) | ||
|---|---|---|---|---|---|---|
|
| rs3741664 | rFSH (IU) | AG | 1420 (338) |
| AG vs. GG |
| GG | 2025 (1350) | |||||
|
| rs1394205 | AMH (ng/mL) | AA | 6.80 (8.92) |
| AA+AG vs.GG |
| AG | 2.83 (5.33) | |||||
| GG | 1.36 (3.01) | |||||
| rFSH (IU)/oocyte | AA | 147.92 (268.21) |
| AA+AG vs.GG | ||
| AG | 125.00 (108.04) | |||||
| GG | 235.71 (571.88) | |||||
|
| rs6166 | bFSH (mIU/mL) | AA | 5.75 (2.83) |
| AA vs. AG+GG |
| AG | 5.25 (2.94) | |||||
| GG | 4.60 (1.50) | |||||
|
| rs2234693 | Estradiol on hCG day (pmol/L) | CC | 1.980 (3.44) |
| CC vs CT+TT |
| CT | 4.625 (5.36) | |||||
| TT | 3.060 (9.18) |
Notes: P < 0.05 was considered statistically significant. Statistically significant values are written in bold
bFSH basal follicle-stimulating hormone, AMH basal anti-Müllerian hormone, hCG human chorionic gonadotropin, rFSH recombinant follicle-stimulating hormone, IU international units
P is from Mann-Whitney test