| Literature DB >> 30405573 |
Lorena Hormeño1, María Ugarte-Ruiz2, Gonzalo Palomo3, Carmen Borge4, Diego Florez-Cuadrado2, Santiago Vadillo3, Segundo Píriz3, Lucas Domínguez2, Maria J Campos5, Alberto Quesada1.
Abstract
Thermotolerant Campylobacter species C. jejuni and C. coli are actually recognized as the major bacterial agent responsible for food-transmitted gastroenteritis. The most effective antimicrobials against Campylobacter are macrolides and some, but not all aminoglycosides. Among these, susceptibility to streptomycin is reduced by mutations in the ribosomal RPSL protein or by expression of ANT(6)-I aminoglycoside O-nucleotidyltransferases. The presence of streptomycin resistance genes was evaluated among streptomycin-resistant Campylobacter isolated from humans and animals by using PCR with degenerated primers devised to distinguish ant(6)-Ia, ant(6)-Ib and other ant-like genes. Genes encoding ANT(6)-I enzymes were found in all possible combinations with a major fraction of the isolates carrying a previously described ant-like gene, distantly related and belonging to the new ant(6)-I sub-family ant(6)-Ie. Among Campylobacter isolates, ant(6)-Ie was uniquely found functional in C. coli, as shown by gene transfer and phenotype expression in Escherichia coli, unlike detected coding sequences in C. jejuni that were truncated by an internal frame shift associated to RPSL mutations in streptomycin resistant strains. The genetic relationships of C. coli isolates with ANT(6)-Ie revealed one cluster of strains presented in bovine and humans, suggesting a circulation pathway of Campylobacter strains by consuming contaminated calf meat by bacteria expressing this streptomycin resistance element.Entities:
Keywords: ANT(6)-I; Campylobacter coli; Campylobacter jejuni; aminoglycoside adenylyl transferases; streptomycin-resistance
Year: 2018 PMID: 30405573 PMCID: PMC6206021 DOI: 10.3389/fmicb.2018.02515
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Primers used in this work.
| Name | Sequence (5′-3′) | T1 | Bp2 | Reference |
|---|---|---|---|---|
| RPSLF | CCAGCGCTTAAAAAT TGTCC | 55 | 247 | |
| RPSLR | TATCAAGAGCACCA CGAACG | |||
| INT1F | GGCTCTCGGGTAAC ATCAAGG | 54 | 242 | |
| INT1R | TCAGGAGATCGGAA GACCTC | |||
| CSF | GGCATCCAAGCAGCAAG | 56 | VAR3 | |
| CSR | AAAAGCAGACTTGA CCTGA | |||
| SAF | TGCAAAA(G/A)CC(G/C) GA(A/G)GATATGG | 56 | 305 | This work |
| SAR | TTCCTT(G/T)CG(G/A) CATA(G/T)CC(C/T)TT | |||
| SBF | GATTGT(T/C)CG(T/C)CAT GAGCTGCT | 57 | 327 | This work |
| SBR | GTGCTATCCAGGCAGC CGGTT | |||
| SCF | TGCCT(A/C)AAATTGG(G/A) T(G/A)AGTT | 52 | 368 | This work |
| SCR | ACCTAGCCA(A/G)ATTTCA AA(A/G)CCAAA | |||
| STREJF | TGCAAAGCGAAAA AAGAAT | 49 | 878 | This work |
| STREJR | TTATAATTTTCTTAAAAT TTTGCAAT | |||
| STRECF | TGCAAAATCAAGATAAAT TTTTAAAAC | 51 | 899 | This work |
| STRECR | TTACAATTTTCCTAAAAT TTTACAAT | |||
| STREFF | GTATGCGCAAAAATGAT TAAAG | 50 | 1110 | This work |
| STREFR | AAGGAAAAATTTAAATAT TGGTTTCA | |||
FIGURE 1Phenotypic and genotypic analysis of streptomycin (STR) resistant isolates. 1Minimal inhibitory concentrations for STR, erythromycin (ERY), gentamicin (GEN), ciprofloxacin (CIP), and tetracycline (TET). 2MIC were determined in the presence of PaβN (mg/L). 3Data previously reported (Hormeño et al., 2016). 4Mutations in the RPSL coding sequence were detected by sequencing (WT, no mutation). 5Genes ant(6)-I were amplified with PCR with specific primers. ND, not determined.
FIGURE 2The ANT(6)-I phylogenetic tree. Multiple sequence alignment was performed by Clustal X 2.1. The phylogenetic tree was deduced by neighbor joining algorithm, excluding positions with gaps and emulated by NJPlot 2.3. Bootstrap values (N, 100; seeds, 111) are indicated for branches supporting sequence clustering and assuming previous data (Abril et al., 2010).
ant(6)-I genotypes of streptomycin resistant Campylobacter isolates.
| Host | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| a | b | e | a/b | a/e | b/e | a/b/e | Ø | Σ | |
| Human2 | 1 | 1 | 6(4) | - | - | 1(1) | - | 7(1) | 16 (6) |
| Poultry | 13(8) | 1(1) | - | 10(9) | 1(1) | - | 2(1) | 5(1) | 32 (21) |
| Porcine | 4(4) | - | 10(10) | 2(2) | 7(7) | 4(4) | 1(1) | 1(1) | 29 (29) |
| Bovine | 2(1) | - | 1(1) | - | 1(1) | - | - | - | 4 (3) |
| Σ | 20(13) | 2(1) | 17(15) | 12(11) | 9(9) | 5(5) | 3(2) | 6(3) | 81 (59) |
Molecular and antimicrobial resistance typing of Campylobacter isolates carrying1 ant(6)-Ie.
| MIC (mg/L)2 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Strain | Year | Origin | STR | ERY | GEN | CIP | TET | CC3 | ST4 | |
| ZTA10/00526CPD | 2010 | Porcine | ≥32 | 1 | 4 | ≥8 | ≥32 | ST-828 | 7337 | ND |
| ZTA10/00602CPD | 2010 | Porcine | ≥32 | ≥64 | 4 | ≥8 | ≥32 | ND | 7340 | ND |
| ZTA10/00794CPD | 2010 | Porcine | ≥32 | 1 | 4 | ≥8 | ≥32 | ST-828 | 829 | ND |
| ZTA10/01257CPD | 2010 | Bovine | ≥32 | 1 | 2 | ≥8 | ≥32 | ST-828 | 827 | 0236 |
| ZTA10/01418CPD | 2010 | Porcine | ≥32 | ≥64 | 2 | ≥8 | ≥32 | ST-828 | 1413 | ND |
| ZTA10/02049CPD | 2010 | Porcine | ≥32 | 2 | 2 | ≥8 | ≥32 | ST-828 | 4950 | ND |
| ZTA11/00514CP | 2011 | Porcine | ≥32 | ≥64 | 2 | ≥8 | ≥32 | ND | 7341 | 0662 |
| ZTA11/00726CP | 2011 | Porcine | ≥32 | 1 | 4 | 0.13 | ≥32 | ST-828 | 7338 | ND |
| ZTA11/01342CP | 2011 | Porcine | ≥32 | ≥64 | 4 | 0.25 | ≥32 | ST-828 | 1413 | ND |
| ZTA11/03282CP | 2011 | Porcine | ≥32 | 0.5 | 1 | ≥8 | ≥32 | ST-828 | 1096 | 0319 |
| ZTA11/03389CP | 2011 | Porcine | ≥32 | ≥64 | 2 | ≥8 | ≥32 | ST-828 | 2733 | ND |
| HSA028 | 2010 | Human | 128 | 8 | 2 | 32 | 256 | ST-828 | 827 | 0236 |
| HSA046 | 2010 | Human | 64 | 2 | 2 | 0.25 | 256 | ST-828 | 827 | 0255 |
| HNA4 | 2010 | Human | 32 | 2 | 2 | 2 | 256 | ND | 7339 | 0633 |