Literature DB >> 30401432

Regulation of Neuroregeneration by Long Noncoding RNAs.

Rotem Ben-Tov Perry1, Hadas Hezroni2, Micah Jonathan Goldrich2, Igor Ulitsky3.   

Abstract

In mammals, neurons in the peripheral nervous system (PNS) have regenerative capacity following injury, but it is generally absent in the CNS. This difference is attributed, at least in part, to the intrinsic ability of PNS neurons to activate a unique regenerative transcriptional program following injury. Here, we profiled gene expression following sciatic nerve crush in mice and identified long noncoding RNAs (lncRNAs) that act in the regenerating neurons and which are typically not expressed in other contexts. We show that two of these lncRNAs regulate the extent of neuronal outgrowth. We then focus on one of these, Silc1, and show that it regulates neuroregeneration in cultured cells and in vivo, through cis-acting activation of the transcription factor Sox11.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CRISPR; Norris1; Silc1; Sox11; dorsal root ganglion; long noncoding RNA; regeneration; sciatic nerve injury

Mesh:

Substances:

Year:  2018        PMID: 30401432      PMCID: PMC6542662          DOI: 10.1016/j.molcel.2018.09.021

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  83 in total

1.  CLICK: a clustering algorithm with applications to gene expression analysis.

Authors:  R Sharan; R Shamir
Journal:  Proc Int Conf Intell Syst Mol Biol       Date:  2000

2.  Gene expression profiling reveals multiple novel intrinsic and extrinsic factors associated with axonal regeneration failure.

Authors:  Patrick Küry; Daniel Abankwa; Fabian Kruse; Regine Greiner-Petter; Hans Werner Müller
Journal:  Eur J Neurosci       Date:  2004-01       Impact factor: 3.386

3.  Axoplasmic importins enable retrograde injury signaling in lesioned nerve.

Authors:  Shlomit Hanz; Eran Perlson; Dianna Willis; Jun-Qi Zheng; R'ada Massarwa; Juan J Huerta; Martin Koltzenburg; Matthias Kohler; Jan van-Minnen; Jeffery L Twiss; Mike Fainzilber
Journal:  Neuron       Date:  2003-12-18       Impact factor: 17.173

4.  Analysis of genes induced in peripheral nerve after axotomy using cDNA microarrays.

Authors:  Tateki Kubo; Toshihide Yamashita; Atsushi Yamaguchi; Ko Hosokawa; Masaya Tohyama
Journal:  J Neurochem       Date:  2002-09       Impact factor: 5.372

5.  Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome.

Authors:  Timothy Ravasi; Harukazu Suzuki; Ken C Pang; Shintaro Katayama; Masaaki Furuno; Rie Okunishi; Shiro Fukuda; Kelin Ru; Martin C Frith; M Milena Gongora; Sean M Grimmond; David A Hume; Yoshihide Hayashizaki; John S Mattick
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

6.  Ninjurin2, a novel homophilic adhesion molecule, is expressed in mature sensory and enteric neurons and promotes neurite outgrowth.

Authors:  T Araki; J Milbrandt
Journal:  J Neurosci       Date:  2000-01-01       Impact factor: 6.167

7.  Activating transcription factor 3 (ATF3) induction by axotomy in sensory and motoneurons: A novel neuronal marker of nerve injury.

Authors:  H Tsujino; E Kondo; T Fukuoka; Y Dai; A Tokunaga; K Miki; K Yonenobu; T Ochi; K Noguchi
Journal:  Mol Cell Neurosci       Date:  2000-02       Impact factor: 4.314

8.  Vimentin-dependent spatial translocation of an activated MAP kinase in injured nerve.

Authors:  Eran Perlson; Shlomit Hanz; Keren Ben-Yaakov; Yael Segal-Ruder; Rony Seger; Mike Fainzilber
Journal:  Neuron       Date:  2005-03-03       Impact factor: 17.173

9.  The AP-1 transcription factor c-Jun is required for efficient axonal regeneration.

Authors:  Gennadij Raivich; Marion Bohatschek; Clive Da Costa; Osuke Iwata; Matthias Galiano; Maria Hristova; Abdolrahman S Nateri; Milan Makwana; Lluís Riera-Sans; David P Wolfer; Hans-Peter Lipp; Adriano Aguzzi; Erwin F Wagner; Axel Behrens
Journal:  Neuron       Date:  2004-07-08       Impact factor: 17.173

10.  Replicate high-density rat genome oligonucleotide microarrays reveal hundreds of regulated genes in the dorsal root ganglion after peripheral nerve injury.

Authors:  Michael Costigan; Katia Befort; Laurie Karchewski; Robert S Griffin; Donatella D'Urso; Andrew Allchorne; Joanne Sitarski; James W Mannion; Richard E Pratt; Clifford J Woolf
Journal:  BMC Neurosci       Date:  2002-10-25       Impact factor: 3.288

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  27 in total

1.  DLK regulates a distinctive transcriptional regeneration program after peripheral nerve injury.

Authors:  Jung Eun Shin; Hongseok Ha; Yoon Ki Kim; Yongcheol Cho; Aaron DiAntonio
Journal:  Neurobiol Dis       Date:  2019-02-05       Impact factor: 5.996

2.  Long Non-coding RNA Expression Profile in Broiler Liver with Cadmium-Induced Oxidative Damage.

Authors:  Chunlin Yu; Chaowu Yang; Xiaoyan Song; Jingjing Li; Han Peng; Mohan Qiu; Li Yang; Huarui Du; Xiaosong Jiang; Yiping Liu
Journal:  Biol Trace Elem Res       Date:  2020-10-19       Impact factor: 3.738

3.  [Regulatory role of long non-coding RNA in peripheral nerve injury and neural regeneration].

Authors:  Ying Peng; Haodong Lin
Journal:  Zhongguo Xiu Fu Chong Jian Wai Ke Za Zhi       Date:  2021-08-15

Review 4.  From genotype to phenotype: genetics of mammalian long non-coding RNAs in vivo.

Authors:  Daniel Andergassen; John L Rinn
Journal:  Nat Rev Genet       Date:  2021-11-26       Impact factor: 53.242

5.  News from around the RNA world: new avenues in RNA biology, biotechnology and therapeutics from the 2022 SIBBM meeting.

Authors:  Virginia Brancato; Ilaria Brentari; Lucia Coscujuela Tarrero; Mattia Furlan; Francesco Nicassio; Michela A Denti
Journal:  Biol Open       Date:  2022-10-14       Impact factor: 2.643

6.  The long noncoding RNA Arrl1 inhibits neurite outgrowth by functioning as a competing endogenous RNA during neuronal regeneration in rats.

Authors:  Dong Wang; Yanping Chen; Mingwen Liu; Qianqian Cao; Qihui Wang; Shuoshuo Zhou; Yaxian Wang; Susu Mao; Xiaosong Gu; Zhenge Luo; Bin Yu
Journal:  J Biol Chem       Date:  2020-04-26       Impact factor: 5.157

Review 7.  Long-range enhancer-promoter contacts in gene expression control.

Authors:  Stefan Schoenfelder; Peter Fraser
Journal:  Nat Rev Genet       Date:  2019-08       Impact factor: 53.242

Review 8.  LncRNAs in adaptive immunity: role in physiological and pathological conditions.

Authors:  Pedro Faria Zeni; Marek Mraz
Journal:  RNA Biol       Date:  2020-11-09       Impact factor: 4.652

Review 9.  Gene regulatory programmes of tissue regeneration.

Authors:  Joseph A Goldman; Kenneth D Poss
Journal:  Nat Rev Genet       Date:  2020-06-05       Impact factor: 53.242

Review 10.  Brain Long Noncoding RNAs: Multitask Regulators of Neuronal Differentiation and Function.

Authors:  Sarva Keihani; Verena Kluever; Eugenio F Fornasiero
Journal:  Molecules       Date:  2021-06-28       Impact factor: 4.411

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