Literature DB >> 30397338

Multiple transmissions of de novo mutations in families.

Hákon Jónsson1, Patrick Sulem1, Gudny A Arnadottir1, Gunnar Pálsson1, Hannes P Eggertsson1, Snaedis Kristmundsdottir1, Florian Zink1, Birte Kehr1, Kristjan E Hjorleifsson1, Brynjar Ö Jensson1, Ingileif Jonsdottir1, Sigurdur Einar Marelsson2, Sigurjon Axel Gudjonsson1, Arnaldur Gylfason1, Adalbjorg Jonasdottir1, Aslaug Jonasdottir1, Simon N Stacey1, Olafur Th Magnusson1, Unnur Thorsteinsdottir1,3, Gisli Masson1, Augustine Kong1,4, Bjarni V Halldorsson1,5, Agnar Helgason1,6, Daniel F Gudbjartsson7,8, Kari Stefansson9,10.   

Abstract

De novo mutations (DNMs) cause a large proportion of severe rare diseases of childhood. DNMs that occur early may result in mosaicism of both somatic and germ cells. Such early mutations can cause recurrence of disease. We scanned 1,007 sibling pairs from 251 families and identified 878 DNMs shared by siblings (ssDNMs) at 448 genomic sites. We estimated DNM recurrence probability based on parental mosaicism, sharing of DNMs among siblings, parent-of-origin, mutation type and genomic position. We detected 57.2% of ssDNMs in the parental blood. The recurrence probability of a DNM decreases by 2.27% per year for paternal DNMs and 1.78% per year for maternal DNMs. Maternal ssDNMs are more likely to be T>C mutations than paternal ssDNMs, and less likely to be C>T mutations. Depending on the properties of the DNM, the recurrence probability ranges from 0.011% to 28.5%. We have launched an online calculator to allow estimation of DNM recurrence probability for research purposes.

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Year:  2018        PMID: 30397338     DOI: 10.1038/s41588-018-0259-9

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  33 in total

1.  Highly Sensitive Blocker Displacement Amplification and Droplet Digital PCR Reveal Low-Level Parental FOXF1 Somatic Mosaicism in Families with Alveolar Capillary Dysplasia with Misalignment of Pulmonary Veins.

Authors:  Justyna A Karolak; Qian Liu; Nina G Xie; Lucia R Wu; Gustavo Rocha; Susana Fernandes; Luk Ho-Ming; Ivan F Lo; David Mowat; Elizabeth K Fiorino; Morris Edelman; Joyce Fox; Denise A Hayes; David Witte; Ashley Parrott; Edwina Popek; Przemyslaw Szafranski; David Y Zhang; Pawel Stankiewicz
Journal:  J Mol Diagn       Date:  2020-02-07       Impact factor: 5.568

2.  Parental somatic mosaicism for CNV deletions - A need for more sensitive and precise detection methods in clinical diagnostics settings.

Authors:  Qian Liu; Justyna A Karolak; Christopher M Grochowski; Theresa A Wilson; Jill A Rosenfeld; Carlos A Bacino; Seema R Lalani; Ankita Patel; Amy Breman; Janice L Smith; Sau Wai Cheung; James R Lupski; Weimin Bi; Pawel Stankiewicz
Journal:  Genomics       Date:  2020-05-06       Impact factor: 5.736

Review 3.  Inferring evolutionary dynamics of mutation rates through the lens of mutation spectrum variation.

Authors:  Jedidiah Carlson; William S DeWitt; Kelley Harris
Journal:  Curr Opin Genet Dev       Date:  2020-06-30       Impact factor: 5.578

4.  The germline mutational process in rhesus macaque and its implications for phylogenetic dating.

Authors:  Lucie A Bergeron; Søren Besenbacher; Jaco Bakker; Jiao Zheng; Panyi Li; George Pacheco; Mikkel-Holger S Sinding; Maria Kamilari; M Thomas P Gilbert; Mikkel H Schierup; Guojie Zhang
Journal:  Gigascience       Date:  2021-05-05       Impact factor: 6.524

5.  Paternal age and 13 psychiatric disorders in the offspring: a population-based cohort study of 7 million children in Taiwan.

Authors:  Shi-Heng Wang; Chi-Shin Wu; Le-Yin Hsu; Mei-Chen Lin; Pei-Chun Chen; Wesley K Thompson; Chun-Chieh Fan
Journal:  Mol Psychiatry       Date:  2022-08-30       Impact factor: 13.437

6.  Unbiased mosaic variant assessment in sperm: a cohort study to test predictability of transmission.

Authors:  Martin W Breuss; Xiaoxu Yang; Valentina Stanley; Jennifer McEvoy-Venneri; Xin Xu; Arlene J Morales; Joseph G Gleeson
Journal:  Elife       Date:  2022-07-05       Impact factor: 8.713

7.  Quantitative Assessment of Parental Somatic Mosaicism for Copy-Number Variant (CNV) Deletions.

Authors:  Qian Liu; Christopher M Grochowski; Weimin Bi; James R Lupski; Paweł Stankiewicz
Journal:  Curr Protoc Hum Genet       Date:  2020-06

Review 8.  The origin of human mutation in light of genomic data.

Authors:  Vladimir B Seplyarskiy; Shamil Sunyaev
Journal:  Nat Rev Genet       Date:  2021-06-23       Impact factor: 53.242

9.  Developmental and temporal characteristics of clonal sperm mosaicism.

Authors:  Xiaoxu Yang; Martin W Breuss; Xin Xu; Danny Antaki; Kiely N James; Valentina Stanley; Laurel L Ball; Renee D George; Sara A Wirth; Beibei Cao; An Nguyen; Jennifer McEvoy-Venneri; Guoliang Chai; Shareef Nahas; Lucitia Van Der Kraan; Yan Ding; Jonathan Sebat; Joseph G Gleeson
Journal:  Cell       Date:  2021-08-12       Impact factor: 66.850

Review 10.  Sperm mosaicism: implications for genomic diversity and disease.

Authors:  Martin W Breuss; Xiaoxu Yang; Joseph G Gleeson
Journal:  Trends Genet       Date:  2021-06-19       Impact factor: 11.821

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