Literature DB >> 32619789

Inferring evolutionary dynamics of mutation rates through the lens of mutation spectrum variation.

Jedidiah Carlson1, William S DeWitt2, Kelley Harris3.   

Abstract

There are many possible failure points in the transmission of genetic information that can produce heritable germline mutations. Once a mutation has been passed from parents to offspring for several generations, it can be difficult or impossible to identify its root cause; however, sometimes the nature of the ancestral and derived DNA sequences can provide mechanistic clues about a genetic change that happened hundreds or thousands of generations ago. Here, we review evidence that the sequence context 'spectrum' of germline mutagenesis has been evolving surprisingly rapidly over the history of humans and other species. We go on to discuss possible causal factors that might underlie rapid mutation spectrum evolution.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2020        PMID: 32619789      PMCID: PMC7646088          DOI: 10.1016/j.gde.2020.05.024

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  70 in total

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4.  Reproductive Longevity Predicts Mutation Rates in Primates.

Authors:  Gregg W C Thomas; Richard J Wang; Arthi Puri; R Alan Harris; Muthuswamy Raveendran; Daniel S T Hughes; Shwetha C Murali; Lawrence E Williams; Harsha Doddapaneni; Donna M Muzny; Richard A Gibbs; Christian R Abee; Mary R Galinski; Kim C Worley; Jeffrey Rogers; Predrag Radivojac; Matthew W Hahn
Journal:  Curr Biol       Date:  2018-09-27       Impact factor: 10.834

5.  Inference of Candidate Germline Mutator Loci in Humans from Genome-Wide Haplotype Data.

Authors:  Cathal Seoighe; Aylwyn Scally
Journal:  PLoS Genet       Date:  2017-01-17       Impact factor: 5.917

6.  The dynamics of molecular evolution over 60,000 generations.

Authors:  Benjamin H Good; Michael J McDonald; Jeffrey E Barrick; Richard E Lenski; Michael M Desai
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7.  Comparison of Mutagenic Activities of Various Ultra-Fine Particles.

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8.  Variation of mutational burden in healthy human tissues suggests non-random strand segregation and allows measuring somatic mutation rates.

Authors:  Benjamin Werner; Andrea Sottoriva
Journal:  PLoS Comput Biol       Date:  2018-06-07       Impact factor: 4.475

9.  Reconstructing Indian population history.

Authors:  David Reich; Kumarasamy Thangaraj; Nick Patterson; Alkes L Price; Lalji Singh
Journal:  Nature       Date:  2009-09-24       Impact factor: 49.962

10.  Linked Mutations at Adjacent Nucleotides Have Shaped Human Population Differentiation and Protein Evolution.

Authors:  James G D Prendergast; Carys Pugh; Sarah E Harris; David A Hume; Ian J Deary; Allan Beveridge
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  4 in total

1.  The impact of genetic modifiers on variation in germline mutation rates within and among human populations.

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Journal:  Genetics       Date:  2022-07-30       Impact factor: 4.402

2.  Nonparametric coalescent inference of mutation spectrum history and demography.

Authors:  William S DeWitt; Kameron Decker Harris; Aaron P Ragsdale; Kelley Harris
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 11.205

3.  De novo Mutations in Domestic Cat are Consistent with an Effect of Reproductive Longevity on Both the Rate and Spectrum of Mutations.

Authors:  Richard J Wang; Muthuswamy Raveendran; R Alan Harris; William J Murphy; Leslie A Lyons; Jeffrey Rogers; Matthew W Hahn
Journal:  Mol Biol Evol       Date:  2022-07-02       Impact factor: 8.800

4.  Human Y chromosome sequences from Q Haplogroup reveal a South American settlement pre-18,000 years ago and a profound genomic impact during the Younger Dryas.

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Journal:  PLoS One       Date:  2022-08-17       Impact factor: 3.752

  4 in total

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