Literature DB >> 30395448

RNA Display Methods for the Discovery of Bioactive Macrocycles.

Yichao Huang1, Mareike Margarete Wiedmann1, Hiroaki Suga1.   

Abstract

The past two decades have witnessed the emergence of macrocycles, including macrocyclic peptides, as a promising yet underexploited class of de novo drug candidates. Both rational/computational design and in vitro display systems have contributed tremendously to the development of cyclic peptide binders of either traditional targets such as cell-surface receptors and enzymes or challenging targets such as protein-protein interaction surfaces. mRNA display, a key platform technology for the discovery of cyclic peptide ligands, has become one of the leading strategies that can generate natural-product-like macrocyclic peptide binders with antibody-like affinities. On the basis of the original cell-free transcription/translation system, mRNA display is highly evolvable to realize its full potential by applying genetic reprogramming and chemical/enzymatic modifications. In addition, mRNA display also allows the follow-up hit-to-lead development using high-throughput focused affinity maturation. Finally, mRNA-displayed peptides can be readily engineered to create chemical conjugates based on known small molecules or biologics. This review covers the birth and growth of mRNA display and discusses the above features of mRNA display with success stories and future perspectives and is up to date as of August 2018.

Year:  2018        PMID: 30395448     DOI: 10.1021/acs.chemrev.8b00430

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  28 in total

Review 1.  Trends in peptide drug discovery.

Authors:  Markus Muttenthaler; Glenn F King; David J Adams; Paul F Alewood
Journal:  Nat Rev Drug Discov       Date:  2021-02-03       Impact factor: 84.694

2.  Exploring the Post-translational Enzymology of PaaA by mRNA Display.

Authors:  Steven R Fleming; Paul M Himes; Swapnil V Ghodge; Yuki Goto; Hiroaki Suga; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2020-03-06       Impact factor: 15.419

3.  Understanding Cell Penetration of Cyclic Peptides.

Authors:  Patrick G Dougherty; Ashweta Sahni; Dehua Pei
Journal:  Chem Rev       Date:  2019-05-14       Impact factor: 60.622

4.  Reporter system architecture affects measurements of noncanonical amino acid incorporation efficiency and fidelity.

Authors:  K A Potts; J T Stieglitz; M Lei; J A Van Deventer
Journal:  Mol Syst Des Eng       Date:  2020-01-23

5.  Geared Toward Applications: A Perspective on Functional Sequence-Controlled Polymers.

Authors:  Cangjie Yang; Kevin B Wu; Yu Deng; Jingsong Yuan; Jia Niu
Journal:  ACS Macro Lett       Date:  2021-01-20       Impact factor: 6.903

6.  Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites.

Authors:  Paris R Watson; Timothy W Craven; Xinting Li; Stephen Rettie; Parisa Hosseinzadeh; Fátima Pardo-Avila; Asim K Bera; Vikram Khipple Mulligan; Peilong Lu; Alexander S Ford; Brian D Weitzner; Lance J Stewart; Adam P Moyer; Maddalena Di Piazza; Joshua G Whalen; Per Jr Greisen; David W Christianson; David Baker
Journal:  Nat Commun       Date:  2021-06-07       Impact factor: 14.919

7.  Genetically-encoded discovery of proteolytically stable bicyclic inhibitors for morphogen NODAL.

Authors:  Jeffrey Y-K Wong; Raja Mukherjee; Jiayuan Miao; Olena Bilyk; Vivian Triana; Mark Miskolzie; Antoine Henninot; John J Dwyer; Serhii Kharchenko; Anna Iampolska; Dmitriy M Volochnyuk; Yu-Shan Lin; Lynne-Marie Postovit; Ratmir Derda
Journal:  Chem Sci       Date:  2021-06-17       Impact factor: 9.825

Review 8.  Targeting receptor complexes: a new dimension in drug discovery.

Authors:  Mette Ishøy Rosenbaum; Louise S Clemmensen; David S Bredt; Bernhard Bettler; Kristian Strømgaard
Journal:  Nat Rev Drug Discov       Date:  2020-11-11       Impact factor: 84.694

Review 9.  Cheminformatic analysis of natural product-based drugs and chemical probes.

Authors:  Samantha Stone; David J Newman; Steven L Colletti; Derek S Tan
Journal:  Nat Prod Rep       Date:  2022-01-26       Impact factor: 13.423

10.  De novo macrocyclic peptides dissect energy coupling of a heterodimeric ABC transporter by multimode allosteric inhibition.

Authors:  Erich Stefan; Richard Obexer; Susanne Hofmann; Khanh Vu Huu; Yichao Huang; Nina Morgner; Hiroaki Suga; Robert Tampé
Journal:  Elife       Date:  2021-04-30       Impact factor: 8.140

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