Literature DB >> 30390160

Ways of improving precise knock-in by genome-editing technologies.

Svetlana A Smirnikhina1, Arina A Anuchina2, Alexander V Lavrov2,3.   

Abstract

Despite the recent discover of genome-editing methods, today we can say these approaches have firmly entered our life. Two approaches-knocking out malfunctioning gene allele or correcting the mutation with precise knock-in-can be used in hereditary monogenic diseases treatment. The latter approach is relatively ineffective. Modern data about the ways of repair of double-strand DNA breaks formed by nucleases are presented in this review. The main part of the review is devoted to the ways of increasing precise and effective knock-in: inhibition of non-homologous end joining and stimulation of homology-directed repair key factors, use of small molecules with unknown mechanism of action, cell-cycle synchronization and cell-cycle-dependent activity of Cas9, donor molecule design, selection, alternative methods for insertion and other approaches.

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Mesh:

Year:  2018        PMID: 30390160      PMCID: PMC7087808          DOI: 10.1007/s00439-018-1953-5

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  145 in total

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Authors:  Marina Bibikova; Mary Golic; Kent G Golic; Dana Carroll
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2.  Enhancing gene targeting with designed zinc finger nucleases.

Authors:  Marina Bibikova; Kelly Beumer; Jonathan K Trautman; Dana Carroll
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Authors:  L Chen; K Trujillo; P Sung; A E Tomkinson
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4.  Indirubin, the active constituent of a Chinese antileukaemia medicine, inhibits cyclin-dependent kinases.

Authors:  R Hoessel; S Leclerc; J A Endicott; M E Nobel; A Lawrie; P Tunnah; M Leost; E Damiens; D Marie; D Marko; E Niederberger; W Tang; G Eisenbrand; L Meijer
Journal:  Nat Cell Biol       Date:  1999-05       Impact factor: 28.824

5.  Hairpin opening and overhang processing by an Artemis/DNA-dependent protein kinase complex in nonhomologous end joining and V(D)J recombination.

Authors:  Yunmei Ma; Ulrich Pannicke; Klaus Schwarz; Michael R Lieber
Journal:  Cell       Date:  2002-03-22       Impact factor: 41.582

6.  Lithium inhibits cell cycle progression and induces stabilization of p53 in bovine aortic endothelial cells.

Authors:  C D Mao; P Hoang; P E DiCorleto
Journal:  J Biol Chem       Date:  2001-05-03       Impact factor: 5.157

7.  Insights into DNA recombination from the structure of a RAD51-BRCA2 complex.

Authors:  Luca Pellegrini; David S Yu; Thomas Lo; Shubha Anand; MiYoung Lee; Tom L Blundell; Ashok R Venkitaraman
Journal:  Nature       Date:  2002-11-10       Impact factor: 49.962

8.  2,6-disubstituted pyran-4-one and thiopyran-4-one inhibitors of DNA-Dependent protein kinase (DNA-PK).

Authors:  Jonathan J Hollick; Bernard T Golding; Ian R Hardcastle; Niall Martin; Caroline Richardson; Laurent J M Rigoreau; Graeme C M Smith; Roger J Griffin
Journal:  Bioorg Med Chem Lett       Date:  2003-09-15       Impact factor: 2.823

9.  Inhibition by brefeldin A of a Golgi membrane enzyme that catalyses exchange of guanine nucleotide bound to ARF.

Authors:  J B Helms; J E Rothman
Journal:  Nature       Date:  1992-11-26       Impact factor: 49.962

10.  Prolonged arrest of mammalian cells at the G1/S boundary results in permanent S phase stasis.

Authors:  Franck Borel; Françoise B Lacroix; Robert L Margolis
Journal:  J Cell Sci       Date:  2002-07-15       Impact factor: 5.285

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  9 in total

Review 1.  TIRR: a potential front runner in HDR race-hypotheses and perspectives.

Authors:  A A Anuchina; A V Lavrov; S A Smirnikhina
Journal:  Mol Biol Rep       Date:  2020-02-08       Impact factor: 2.316

Review 2.  Improving Homology-Directed Repair in Genome Editing Experiments by Influencing the Cell Cycle.

Authors:  Svetlana A Smirnikhina; Milyausha I Zaynitdinova; Vasilina A Sergeeva; Alexander V Lavrov
Journal:  Int J Mol Sci       Date:  2022-05-26       Impact factor: 6.208

Review 3.  Modeling hypertrophic cardiomyopathy with human cardiomyocytes derived from induced pluripotent stem cells.

Authors:  Jiangtao Li; Xin Feng; Xiang Wei
Journal:  Stem Cell Res Ther       Date:  2022-06-03       Impact factor: 8.079

4.  A high-throughput small molecule screen identifies farrerol as a potentiator of CRISPR/Cas9-mediated genome editing.

Authors:  Weina Zhang; Yu Chen; Jiaqing Yang; Jing Zhang; Jiayu Yu; Mengting Wang; Xiaodong Zhao; Ke Wei; Xiaoping Wan; Xiaojun Xu; Ying Jiang; Jiayu Chen; Shaorong Gao; Zhiyong Mao
Journal:  Elife       Date:  2020-07-09       Impact factor: 8.140

Review 5.  Human Induced Pluripotent Stem-Cell-Derived Cardiomyocytes as Models for Genetic Cardiomyopathies.

Authors:  Andreas Brodehl; Hans Ebbinghaus; Marcus-André Deutsch; Jan Gummert; Anna Gärtner; Sandra Ratnavadivel; Hendrik Milting
Journal:  Int J Mol Sci       Date:  2019-09-06       Impact factor: 5.923

6.  CRISPR-Cas12a-assisted PCR tagging of mammalian genes.

Authors:  Julia Fueller; Konrad Herbst; Matthias Meurer; Krisztina Gubicza; Bahtiyar Kurtulmus; Julia D Knopf; Daniel Kirrmaier; Benjamin C Buchmuller; Gislene Pereira; Marius K Lemberg; Michael Knop
Journal:  J Cell Biol       Date:  2020-06-01       Impact factor: 10.539

7.  Allele-specific endogenous tagging and quantitative analysis of β-catenin in colorectal cancer cells.

Authors:  Giulia Ambrosi; Oksana Voloshanenko; Antonia F Eckert; Dominique Kranz; G Ulrich Nienhaus; Michael Boutros
Journal:  Elife       Date:  2022-01-11       Impact factor: 8.140

Review 8.  Advance trends in targeting homology-directed repair for accurate gene editing: An inclusive review of small molecules and modified CRISPR-Cas9 systems.

Authors:  Forough Shams; Hadi Bayat; Omid Mohammadian; Somayeh Mahboudi; Hassan Vahidnezhad; Mohsen Soosanabadi; Azam Rahimpour
Journal:  Bioimpacts       Date:  2022-06-22

Review 9.  Principles and Applications of CRISPR Toolkit in Virus Manipulation, Diagnosis, and Virus-Host Interactions.

Authors:  Saleh Jamehdor; Sara Pajouhanfar; Sadaf Saba; Georges Uzan; Ali Teimoori; Sina Naserian
Journal:  Cells       Date:  2022-03-15       Impact factor: 6.600

  9 in total

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