Literature DB >> 30388399

Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.

Symen Ligthart1, Ahmad Vaez2, Urmo Võsa3, Maria G Stathopoulou4, Paul S de Vries5, Bram P Prins6, Peter J Van der Most7, Toshiko Tanaka8, Elnaz Naderi9, Lynda M Rose10, Ying Wu11, Robert Karlsson12, Maja Barbalic13, Honghuang Lin14, René Pool15, Gu Zhu16, Aurélien Macé17, Carlo Sidore18, Stella Trompet19, Massimo Mangino20, Maria Sabater-Lleal21, John P Kemp22, Ali Abbasi23, Tim Kacprowski24, Niek Verweij25, Albert V Smith26, Tao Huang27, Carola Marzi28, Mary F Feitosa29, Kurt K Lohman30, Marcus E Kleber31, Yuri Milaneschi32, Christian Mueller33, Mahmudul Huq7, Efthymia Vlachopoulou34, Leo-Pekka Lyytikäinen35, Christopher Oldmeadow36, Joris Deelen37, Markus Perola38, Jing Hua Zhao39, Bjarke Feenstra40, Marzyeh Amini7, Jari Lahti41, Katharina E Schraut42, Myriam Fornage43, Bhoom Suktitipat44, Wei-Min Chen45, Xiaohui Li46, Teresa Nutile47, Giovanni Malerba48, Jian'an Luan39, Tom Bak49, Nicholas Schork50, Fabiola Del Greco M51, Elisabeth Thiering52, Anubha Mahajan53, Riccardo E Marioni54, Evelin Mihailov55, Joel Eriksson56, Ayse Bilge Ozel57, Weihua Zhang58, Maria Nethander59, Yu-Ching Cheng60, Stella Aslibekyan61, Wei Ang62, Ilaria Gandin63, Loïc Yengo64, Laura Portas65, Charles Kooperberg66, Edith Hofer67, Kumar B Rajan68, Claudia Schurmann69, Wouter den Hollander70, Tarunveer S Ahluwalia71, Jing Zhao72, Harmen H M Draisma73, Ian Ford74, Nicholas Timpson75, Alexander Teumer76, Hongyan Huang77, Simone Wahl28, YongMei Liu30, Jie Huang78, Hae-Won Uh79, Frank Geller40, Peter K Joshi42, Lisa R Yanek80, Elisabetta Trabetti48, Benjamin Lehne81, Diego Vozzi82, Marie Verbanck83, Ginevra Biino84, Yasaman Saba85, Ingrid Meulenbelt70, Jeff R O'Connell60, Markku Laakso86, Franco Giulianini10, Patrik K E Magnusson12, Christie M Ballantyne87, Jouke Jan Hottenga88, Grant W Montgomery16, Fernando Rivadineira89, Rico Rueedi90, Maristella Steri18, Karl-Heinz Herzig91, David J Stott92, Cristina Menni93, Mattias Frånberg94, Beate St Pourcain95, Stephan B Felix96, Tune H Pers97, Stephan J L Bakker98, Peter Kraft77, Annette Peters99, Dhananjay Vaidya80, Graciela Delgado31, Johannes H Smit32, Vera Großmann100, Juha Sinisalo101, Ilkka Seppälä35, Stephen R Williams102, Elizabeth G Holliday36, Matthijs Moed103, Claudia Langenberg39, Katri Räikkönen104, Jingzhong Ding105, Harry Campbell42, Michele M Sale45, Yii-Der I Chen46, Alan L James106, Daniela Ruggiero107, Nicole Soranzo108, Catharina A Hartman49, Erin N Smith109, Gerald S Berenson110, Christian Fuchsberger51, Dena Hernandez111, Carla M T Tiesler52, Vilmantas Giedraitis112, David Liewald113, Krista Fischer55, Dan Mellström56, Anders Larsson114, Yunmei Wang115, William R Scott81, Matthias Lorentzon116, John Beilby117, Kathleen A Ryan60, Craig E Pennell62, Dragana Vuckovic118, Beverly Balkau119, Maria Pina Concas82, Reinhold Schmidt120, Carlos F Mendes de Leon121, Erwin P Bottinger122, Margreet Kloppenburg123, Lavinia Paternoster75, Michael Boehnke124, A W Musk125, Gonneke Willemsen88, David M Evans22, Pamela A F Madden126, Mika Kähönen127, Zoltán Kutalik128, Magdalena Zoledziewska18, Ville Karhunen129, Stephen B Kritchevsky130, Naveed Sattar131, Genevieve Lachance93, Robert Clarke132, Tamara B Harris133, Olli T Raitakari134, John R Attia135, Diana van Heemst136, Eero Kajantie137, Rossella Sorice47, Giovanni Gambaro138, Robert A Scott39, Andrew A Hicks51, Luigi Ferrucci8, Marie Standl139, Cecilia M Lindgren140, John M Starr141, Magnus Karlsson142, Lars Lind114, Jun Z Li57, John C Chambers143, Trevor A Mori62, Eco J C N de Geus15, Andrew C Heath126, Nicholas G Martin16, Juha Auvinen144, Brendan M Buckley145, Anton J M de Craen136, Melanie Waldenberger146, Konstantin Strauch147, Thomas Meitinger148, Rodney J Scott149, Mark McEvoy36, Marian Beekman103, Cristina Bombieri48, Paul M Ridker150, Karen L Mohlke11, Nancy L Pedersen12, Alanna C Morrison151, Dorret I Boomsma88, John B Whitfield16, David P Strachan152, Albert Hofman1, Peter Vollenweider153, Francesco Cucca18, Marjo-Riitta Jarvelin154, J Wouter Jukema155, Tim D Spector93, Anders Hamsten156, Tanja Zeller157, André G Uitterlinden158, Matthias Nauck159, Vilmundur Gudnason26, Lu Qi160, Harald Grallert28, Ingrid B Borecki161, Jerome I Rotter162, Winfried März163, Philipp S Wild164, Marja-Liisa Lokki34, Michael Boyle165, Veikko Salomaa38, Mads Melbye166, Johan G Eriksson167, James F Wilson168, Brenda W J H Penninx32, Diane M Becker80, Bradford B Worrall169, Greg Gibson72, Ronald M Krauss170, Marina Ciullo107, Gianluigi Zaza171, Nicholas J Wareham39, Albertine J Oldehinkel49, Lyle J Palmer172, Sarah S Murray173, Peter P Pramstaller174, Stefania Bandinelli175, Joachim Heinrich176, Erik Ingelsson177, Ian J Deary178, Reedik Mägi55, Liesbeth Vandenput56, Pim van der Harst25, Karl C Desch179, Jaspal S Kooner180, Claes Ohlsson56, Caroline Hayward181, Terho Lehtimäki35, Alan R Shuldiner60, Donna K Arnett182, Lawrence J Beilin62, Antonietta Robino82, Philippe Froguel183, Mario Pirastu65, Tine Jess184, Wolfgang Koenig185, Ruth J F Loos186, Denis A Evans68, Helena Schmidt187, George Davey Smith75, P Eline Slagboom103, Gudny Eiriksdottir188, Andrew P Morris189, Bruce M Psaty190, Russell P Tracy191, Ilja M Nolte7, Eric Boerwinkle192, Sophie Visvikis-Siest4, Alex P Reiner193, Myron Gross194, Joshua C Bis195, Lude Franke196, Oscar H Franco197, Emelia J Benjamin198, Daniel I Chasman150, Josée Dupuis199, Harold Snieder7, Abbas Dehghan200, Behrooz Z Alizadeh201.   

Abstract

C-reactive protein (CRP) is a sensitive biomarker of chronic low-grade inflammation and is associated with multiple complex diseases. The genetic determinants of chronic inflammation remain largely unknown, and the causal role of CRP in several clinical outcomes is debated. We performed two genome-wide association studies (GWASs), on HapMap and 1000 Genomes imputed data, of circulating amounts of CRP by using data from 88 studies comprising 204,402 European individuals. Additionally, we performed in silico functional analyses and Mendelian randomization analyses with several clinical outcomes. The GWAS meta-analyses of CRP revealed 58 distinct genetic loci (p < 5 × 10-8). After adjustment for body mass index in the regression analysis, the associations at all except three loci remained. The lead variants at the distinct loci explained up to 7.0% of the variance in circulating amounts of CRP. We identified 66 gene sets that were organized in two substantially correlated clusters, one mainly composed of immune pathways and the other characterized by metabolic pathways in the liver. Mendelian randomization analyses revealed a causal protective effect of CRP on schizophrenia and a risk-increasing effect on bipolar disorder. Our findings provide further insights into the biology of inflammation and could lead to interventions for treating inflammation and its clinical consequences.
Copyright © 2018 American Society of Human Genetics. All rights reserved.

Entities:  

Keywords:  C-reactive protein; DEPICT; Mendelian randomization; coronary artery disease; genome-wide association study; inflammation; inflammatory disorders; schizophrenia; system biology

Mesh:

Substances:

Year:  2018        PMID: 30388399      PMCID: PMC6218410          DOI: 10.1016/j.ajhg.2018.09.009

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  51 in total

1.  LD Score regression distinguishes confounding from polygenicity in genome-wide association studies.

Authors:  Brendan K Bulik-Sullivan; Po-Ru Loh; Hilary K Finucane; Stephan Ripke; Jian Yang; Nick Patterson; Mark J Daly; Alkes L Price; Benjamin M Neale
Journal:  Nat Genet       Date:  2015-02-02       Impact factor: 38.330

2.  C-reactive protein is increased in schizophrenia but is not altered by antipsychotics: meta-analysis and implications.

Authors:  B S Fernandes; J Steiner; H-G Bernstein; S Dodd; J A Pasco; O M Dean; P Nardin; C-A Gonçalves; M Berk
Journal:  Mol Psychiatry       Date:  2015-07-14       Impact factor: 15.992

3.  C-reactive protein and other circulating markers of inflammation in the prediction of coronary heart disease.

Authors:  John Danesh; Jeremy G Wheeler; Gideon M Hirschfield; Shinichi Eda; Gudny Eiriksdottir; Ann Rumley; Gordon D O Lowe; Mark B Pepys; Vilmundur Gudnason
Journal:  N Engl J Med       Date:  2004-04-01       Impact factor: 91.245

4.  Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium: Design of prospective meta-analyses of genome-wide association studies from 5 cohorts.

Authors:  Bruce M Psaty; Christopher J O'Donnell; Vilmundur Gudnason; Kathryn L Lunetta; Aaron R Folsom; Jerome I Rotter; André G Uitterlinden; Tamara B Harris; Jacqueline C M Witteman; Eric Boerwinkle
Journal:  Circ Cardiovasc Genet       Date:  2009-02

Review 5.  Inflammation and immunity in schizophrenia: implications for pathophysiology and treatment.

Authors:  Golam M Khandaker; Lesley Cousins; Julia Deakin; Belinda R Lennox; Robert Yolken; Peter B Jones
Journal:  Lancet Psychiatry       Date:  2015-02-25       Impact factor: 27.083

6.  Biological interpretation of genome-wide association studies using predicted gene functions.

Authors:  Tune H Pers; Juha M Karjalainen; Yingleong Chan; Harm-Jan Westra; Andrew R Wood; Jian Yang; Julian C Lui; Sailaja Vedantam; Stefan Gustafsson; Tonu Esko; Tim Frayling; Elizabeth K Speliotes; Michael Boehnke; Soumya Raychaudhuri; Rudolf S N Fehrmann; Joel N Hirschhorn; Lude Franke
Journal:  Nat Commun       Date:  2015-01-19       Impact factor: 14.919

7.  Influence of maternal infections on neonatal acute phase proteins and their interaction in the development of non-affective psychosis.

Authors:  Å Blomström; R M Gardner; C Dalman; R H Yolken; H Karlsson
Journal:  Transl Psychiatry       Date:  2015-02-03       Impact factor: 6.222

8.  Functional mapping and annotation of genetic associations with FUMA.

Authors:  Kyoko Watanabe; Erdogan Taskesen; Arjen van Bochoven; Danielle Posthuma
Journal:  Nat Commun       Date:  2017-11-28       Impact factor: 14.919

9.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

10.  Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.

Authors:  Paul S de Vries; Maria Sabater-Lleal; Daniel I Chasman; Stella Trompet; Tarunveer S Ahluwalia; Alexander Teumer; Marcus E Kleber; Ming-Huei Chen; Jie Jin Wang; John R Attia; Riccardo E Marioni; Maristella Steri; Lu-Chen Weng; Rene Pool; Vera Grossmann; Jennifer A Brody; Cristina Venturini; Toshiko Tanaka; Lynda M Rose; Christopher Oldmeadow; Johanna Mazur; Saonli Basu; Mattias Frånberg; Qiong Yang; Symen Ligthart; Jouke J Hottenga; Ann Rumley; Antonella Mulas; Anton J M de Craen; Anne Grotevendt; Kent D Taylor; Graciela E Delgado; Annette Kifley; Lorna M Lopez; Tina L Berentzen; Massimo Mangino; Stefania Bandinelli; Alanna C Morrison; Anders Hamsten; Geoffrey Tofler; Moniek P M de Maat; Harmen H M Draisma; Gordon D Lowe; Magdalena Zoledziewska; Naveed Sattar; Karl J Lackner; Uwe Völker; Barbara McKnight; Jie Huang; Elizabeth G Holliday; Mark A McEvoy; John M Starr; Pirro G Hysi; Dena G Hernandez; Weihua Guan; Fernando Rivadeneira; Wendy L McArdle; P Eline Slagboom; Tanja Zeller; Bruce M Psaty; André G Uitterlinden; Eco J C de Geus; David J Stott; Harald Binder; Albert Hofman; Oscar H Franco; Jerome I Rotter; Luigi Ferrucci; Tim D Spector; Ian J Deary; Winfried März; Andreas Greinacher; Philipp S Wild; Francesco Cucca; Dorret I Boomsma; Hugh Watkins; Weihong Tang; Paul M Ridker; Jan W Jukema; Rodney J Scott; Paul Mitchell; Torben Hansen; Christopher J O'Donnell; Nicholas L Smith; David P Strachan; Abbas Dehghan
Journal:  PLoS One       Date:  2017-01-20       Impact factor: 3.752

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  100 in total

1.  Genetic Interleukin 6 Signaling Deficiency Attenuates Cardiovascular Risk in Clonal Hematopoiesis.

Authors:  Alexander G Bick; James P Pirruccello; Gabriel K Griffin; Namrata Gupta; Stacey Gabriel; Danish Saleheen; Peter Libby; Sekar Kathiresan; Pradeep Natarajan
Journal:  Circulation       Date:  2019-11-11       Impact factor: 29.690

Review 2.  The genetics of human ageing.

Authors:  David Melzer; Luke C Pilling; Luigi Ferrucci
Journal:  Nat Rev Genet       Date:  2019-11-05       Impact factor: 53.242

3.  Trans-biobank analysis with 676,000 individuals elucidates the association of polygenic risk scores of complex traits with human lifespan.

Authors:  Saori Sakaue; Masahiro Kanai; Juha Karjalainen; Masato Akiyama; Mitja Kurki; Nana Matoba; Atsushi Takahashi; Makoto Hirata; Michiaki Kubo; Koichi Matsuda; Yoshinori Murakami; Mark J Daly; Yoichiro Kamatani; Yukinori Okada
Journal:  Nat Med       Date:  2020-03-23       Impact factor: 53.440

4.  Huang et al. Respond to "Ovulation and Systemic and Localized Inflammation Markers" and "Capturing Women's Reproductive Life Spans".

Authors:  Tianyi Huang; Amy L Shafrir; A Heather Eliassen; Kathryn M Rexrode; Shelley S Tworoger
Journal:  Am J Epidemiol       Date:  2020-07-01       Impact factor: 4.897

Review 5.  Posttraumatic Stress Disorder and Inflammation: Untangling Issues of Bidirectionality.

Authors:  Jennifer A Sumner; Kristen M Nishimi; Karestan C Koenen; Andrea L Roberts; Laura D Kubzansky
Journal:  Biol Psychiatry       Date:  2019-11-14       Impact factor: 13.382

6.  Evaluating the Hypothesis That Schizophrenia Is an Inflammatory Disorder.

Authors:  Brian J Miller; David R Goldsmith
Journal:  Focus (Am Psychiatr Publ)       Date:  2020-11-05

7.  Bayesian Genome-wide TWAS Method to Leverage both cis- and trans-eQTL Information through Summary Statistics.

Authors:  Justin M Luningham; Junyu Chen; Shizhen Tang; Philip L De Jager; David A Bennett; Aron S Buchman; Jingjing Yang
Journal:  Am J Hum Genet       Date:  2020-09-21       Impact factor: 11.025

8.  Pro-inflammatory cytokine polymorphisms in ONECUT2 and HNF4A and primary colorectal carcinoma: a post genome-wide gene-lifestyle interaction study.

Authors:  Su Yon Jung; Jeanette C Papp; Eric M Sobel; Matteo Pellegrini; Herbert Yu; Zuo-Feng Zhang
Journal:  Am J Cancer Res       Date:  2020-09-01       Impact factor: 6.166

9.  Allelic Heterogeneity at the CRP Locus Identified by Whole-Genome Sequencing in Multi-ancestry Cohorts.

Authors:  Laura M Raffield; Apoorva K Iyengar; Biqi Wang; Sheila M Gaynor; Cassandra N Spracklen; Xue Zhong; Madeline H Kowalski; Shabnam Salimi; Linda M Polfus; Emelia J Benjamin; Joshua C Bis; Russell Bowler; Brian E Cade; Won Jung Choi; Alejandro P Comellas; Adolfo Correa; Pedro Cruz; Harsha Doddapaneni; Peter Durda; Stephanie M Gogarten; Deepti Jain; Ryan W Kim; Brian G Kral; Leslie A Lange; Martin G Larson; Cecelia Laurie; Jiwon Lee; Seonwook Lee; Joshua P Lewis; Ginger A Metcalf; Braxton D Mitchell; Zeineen Momin; Donna M Muzny; Nathan Pankratz; Cheol Joo Park; Stephen S Rich; Jerome I Rotter; Kathleen Ryan; Daekwan Seo; Russell P Tracy; Karine A Viaud-Martinez; Lisa R Yanek; Lue Ping Zhao; Xihong Lin; Bingshan Li; Yun Li; Josée Dupuis; Alexander P Reiner; Karen L Mohlke; Paul L Auer
Journal:  Am J Hum Genet       Date:  2019-12-26       Impact factor: 11.025

10.  Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.

Authors:  Xikun Han; Jue-Sheng Ong; Jiyuan An; Alex W Hewitt; Puya Gharahkhani; Stuart MacGregor
Journal:  Eur J Epidemiol       Date:  2020-01-03       Impact factor: 8.082

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