Literature DB >> 30386685

Mitochondrial Genomics: A complex field now coming of age.

Elizabeth M McCormick1, Colleen C Muraresku1, Marni J Falk1,2.   

Abstract

PURPOSE OF REVIEW: The groundwork for mitochondrial medicine was laid 30 years ago with identification of the first disease-causing mitochondrial DNA (mtDNA) mutations in 1988. Three decades later, mutations in nearly 300 genes involving every possible mode of inheritance within both nuclear and mitochondrial genomes are now recognized to collectively comprise the largest class of inherited metabolic disease affecting at least 1 in 4,300 individuals across all ages. Significant progress has been made in recent years to improve understanding of mitochondrial biology and disease pathophysiology. RECENT
FINDINGS: Markedly improved understanding of the highly diverse molecular etiologies of multi-systemic phenotypes in primary mitochondrial disease has resulted from massively parallel genomic sequencing technologies and improved bioinformatic resources that enable identification in individual patients of their disease's precise genetic etiology. Key informatics resources of particular utility to the mitochondrial disease genomics community have been developed, including: (1) Mitocarta 2.0 repository of 1200+ verified mitochondria-localized proteins, (2) MITOMAP Web resource of curated mtDNA genome variants, and (3) Mitochondrial Disease Sequence Data Resource (MSeqDR) that centralizes Web curation and annotation of mitochondrial disease genes and variants in both genomes, ontology-defined phenotypes, and access to many analytic tools to support genomic data mining and interpretation. Gene and mutation-based disease categorization has proven particularly useful to identify the full clinical spectrum of disease that may affect a given individual.
SUMMARY: Extensive genomic advances, both in technologic platforms and bioinformatics resources, have facilitated dramatic improvement in the accurate recognition and understanding of primary mitochondrial disease.

Entities:  

Keywords:  database; genomics; mitochondrial disease; pathophysiology

Year:  2018        PMID: 30386685      PMCID: PMC6205240          DOI: 10.1007/s40142-018-0137-x

Source DB:  PubMed          Journal:  Curr Genet Med Rep        ISSN: 2167-4876


  55 in total

1.  Familial mitochondrial encephalomyopathy (MERRF): genetic, pathophysiological, and biochemical characterization of a mitochondrial DNA disease.

Authors:  D C Wallace; X X Zheng; M T Lott; J M Shoffner; J A Hodge; R I Kelley; C M Epstein; L C Hopkins
Journal:  Cell       Date:  1988-11-18       Impact factor: 41.582

2.  MITOMAP: a human mitochondrial genome database.

Authors:  A M Kogelnik; M T Lott; M D Brown; S B Navathe; D C Wallace
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

3.  Sequence and organization of the human mitochondrial genome.

Authors:  S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

4.  Heteroplasmic mtDNA mutation (T----G) at 8993 can cause Leigh disease when the percentage of abnormal mtDNA is high.

Authors:  Y Tatuch; J Christodoulou; A Feigenbaum; J T Clarke; J Wherret; C Smith; N Rudd; R Petrova-Benedict; B H Robinson
Journal:  Am J Hum Genet       Date:  1992-04       Impact factor: 11.025

5.  mtDNA Variation and Analysis Using Mitomap and Mitomaster.

Authors:  Marie T Lott; Jeremy N Leipzig; Olga Derbeneva; H Michael Xie; Dimitra Chalkia; Mahdi Sarmady; Vincent Procaccio; Douglas C Wallace
Journal:  Curr Protoc Bioinformatics       Date:  2013-12

6.  A mitochondrial protein compendium elucidates complex I disease biology.

Authors:  David J Pagliarini; Sarah E Calvo; Betty Chang; Sunil A Sheth; Scott B Vafai; Shao-En Ong; Geoffrey A Walford; Canny Sugiana; Avihu Boneh; William K Chen; David E Hill; Marc Vidal; James G Evans; David R Thorburn; Steven A Carr; Vamsi K Mootha
Journal:  Cell       Date:  2008-07-11       Impact factor: 41.582

Review 7.  The in-depth evaluation of suspected mitochondrial disease.

Authors:  Richard H Haas; Sumit Parikh; Marni J Falk; Russell P Saneto; Nicole I Wolf; Niklas Darin; Lee-Jun Wong; Bruce H Cohen; Robert K Naviaux
Journal:  Mol Genet Metab       Date:  2008-02-01       Impact factor: 4.797

8.  Clinical validity of biochemical and molecular analysis in diagnosing Leigh syndrome: a study of 106 Japanese patients.

Authors:  Erika Ogawa; Masaru Shimura; Takuya Fushimi; Makiko Tajika; Keiko Ichimoto; Ayako Matsunaga; Tomoko Tsuruoka; Mika Ishige; Tatsuo Fuchigami; Taro Yamazaki; Masato Mori; Masakazu Kohda; Yoshihito Kishita; Yasushi Okazaki; Shori Takahashi; Akira Ohtake; Kei Murayama
Journal:  J Inherit Metab Dis       Date:  2017-04-20       Impact factor: 4.982

9.  Genetic diagnosis of Mendelian disorders via RNA sequencing.

Authors:  Laura S Kremer; Daniel M Bader; Christian Mertes; Robert Kopajtich; Garwin Pichler; Arcangela Iuso; Tobias B Haack; Elisabeth Graf; Thomas Schwarzmayr; Caterina Terrile; Eliška Koňaříková; Birgit Repp; Gabi Kastenmüller; Jerzy Adamski; Peter Lichtner; Christoph Leonhardt; Benoit Funalot; Alice Donati; Valeria Tiranti; Anne Lombes; Claude Jardel; Dieter Gläser; Robert W Taylor; Daniele Ghezzi; Johannes A Mayr; Agnes Rötig; Peter Freisinger; Felix Distelmaier; Tim M Strom; Thomas Meitinger; Julien Gagneur; Holger Prokisch
Journal:  Nat Commun       Date:  2017-06-12       Impact factor: 14.919

10.  MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins.

Authors:  Sarah E Calvo; Karl R Clauser; Vamsi K Mootha
Journal:  Nucleic Acids Res       Date:  2015-10-07       Impact factor: 16.971

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  10 in total

1.  Early developmental delay in Leigh syndrome spectrum disorders is associated with poor clinical prognosis.

Authors:  Rory J Tinker; Marni J Falk; Amy Goldstein; Ibrahim George-Sankoh; Rui Xiao; Laura Adang; Rebecca Ganetzky
Journal:  Mol Genet Metab       Date:  2022-02-19       Impact factor: 4.797

2.  Advanced approach for comprehensive mtDNA genome testing in mitochondrial disease.

Authors:  Jing Wang; Jorune Balciuniene; Maria Alejandra Diaz-Miranda; Elizabeth M McCormick; Erfan Aref-Eshghi; Alison M Muir; Kajia Cao; Juliana Troiani; Alicia Moseley; Zhiqian Fan; Zarazuela Zolkipli-Cunningham; Amy Goldstein; Rebecca D Ganetzky; Colleen C Muraresku; James T Peterson; Nancy B Spinner; Douglas C Wallace; Matthew C Dulik; Marni J Falk
Journal:  Mol Genet Metab       Date:  2021-12-18       Impact factor: 4.204

3.  Pre-clinical evaluation of cysteamine bitartrate as a therapeutic agent for mitochondrial respiratory chain disease.

Authors:  Sujay Guha; Chigoziri Konkwo; Manuela Lavorato; Neal D Mathew; Min Peng; Julian Ostrovsky; Young-Joon Kwon; Erzsebet Polyak; Richard Lightfoot; Christoph Seiler; Rui Xiao; Michael Bennett; Zhe Zhang; Eiko Nakamaru-Ogiso; Marni J Falk
Journal:  Hum Mol Genet       Date:  2019-06-01       Impact factor: 6.150

4.  Specifications of the ACMG/AMP standards and guidelines for mitochondrial DNA variant interpretation.

Authors:  Elizabeth M McCormick; Marie T Lott; Matthew C Dulik; Lishuang Shen; Marcella Attimonelli; Ornella Vitale; Amel Karaa; Renkui Bai; Daniel E Pineda-Alvarez; Larry N Singh; Christine M Stanley; Stacey Wong; Anshu Bhardwaj; Daria Merkurjev; Rong Mao; Neal Sondheimer; Shiping Zhang; Vincent Procaccio; Douglas C Wallace; Xiaowu Gai; Marni J Falk
Journal:  Hum Mutat       Date:  2020-11-10       Impact factor: 4.878

5.  Mitochondrial single-stranded DNA binding protein novel de novo SSBP1 mutation in a child with single large-scale mtDNA deletion (SLSMD) clinically manifesting as Pearson, Kearns-Sayre, and Leigh syndromes.

Authors:  Margaret A Gustafson; Elizabeth M McCormick; Lalith Perera; Matthew J Longley; Renkui Bai; Jianping Kong; Matthew Dulik; Lishuang Shen; Amy C Goldstein; Shana E McCormack; Benjamin L Laskin; Bart P Leroy; Xilma R Ortiz-Gonzalez; Meredith G Ellington; William C Copeland; Marni J Falk
Journal:  PLoS One       Date:  2019-09-03       Impact factor: 3.240

6.  A Mutation in the Mitochondrial Aspartate/Glutamate Carrier Leads to a More Oxidizing Intramitochondrial Environment and an Inflammatory Myopathy in Dutch Shepherd Dogs.

Authors:  G Diane Shelton; Katie M Minor; Kefeng Li; Jane C Naviaux; Jon Monk; Lin Wang; Elizabeth Guzik; Ling T Guo; Vito Porcelli; Ruggiero Gorgoglione; Francesco M Lasorsa; Peter J Leegwater; Antonio M Persico; James R Mickelson; Luigi Palmieri; Robert K Naviaux
Journal:  J Neuromuscul Dis       Date:  2019

7.  Nuclear-Encoded lncRNA MALAT1 Epigenetically Controls Metabolic Reprogramming in HCC Cells through the Mitophagy Pathway.

Authors:  Yijing Zhao; Lei Zhou; Hui Li; Tingge Sun; Xue Wen; Xueli Li; Ying Meng; Yan Li; Mengmeng Liu; Shanshan Liu; Su-Jeong Kim; Jialin Xiao; Lingyu Li; Songling Zhang; Wei Li; Pinchas Cohen; Andrew R Hoffman; Ji-Fan Hu; Jiuwei Cui
Journal:  Mol Ther Nucleic Acids       Date:  2020-10-04       Impact factor: 8.886

8.  Low frequency mitochondrial DNA heteroplasmy SNPs in blood, retina, and [RPE+choroid] of age-related macular degeneration subjects.

Authors:  Shari R Atilano; Nitin Udar; Timothy A Satalich; Viraat Udar; Marilyn Chwa; M Cristina Kenney
Journal:  PLoS One       Date:  2021-01-29       Impact factor: 3.240

Review 9.  The Role of Mitochondria in Human Fertility and Early Embryo Development: What Can We Learn for Clinical Application of Assessing and Improving Mitochondrial DNA?

Authors:  Amira Podolak; Izabela Woclawek-Potocka; Krzysztof Lukaszuk
Journal:  Cells       Date:  2022-02-24       Impact factor: 6.600

Review 10.  Causes and Pathophysiology of Acquired Sideroblastic Anemia.

Authors:  Juan Jose Rodriguez-Sevilla; Xavier Calvo; Leonor Arenillas
Journal:  Genes (Basel)       Date:  2022-08-30       Impact factor: 4.141

  10 in total

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