| Literature DB >> 30386167 |
Ilya Viner1,2, Viacheslav Spirin2,3, Lucie Zíbarová4, Karl-Henrik Larsson3.
Abstract
Lagarobasidium is a small genus of wood-decaying basidiomycetes in the order Hymenochaetales. Molecular phylogenetic analyses have either supported Lagarobasidium as a distinct taxon or indicated that it should be subsumed under Xylodon, a genus that covers the majority of species formerly placed in Hyphodontia. We used sequences from the ITS and nuclear LSU regions to infer the phylogenetic position of the type species L.detriticum. Analyses confirm Lagarobasidium as a synonym of Xylodon. Molecular and morphological information show that the traditional concept of L.detriticum covers at least two species, Xylodondetriticus from Europe and X.pruinosus with known distribution in Europe and North America. Three species currently placed in Lagarobasidium are transferred to Xylodon, viz. X.magnificus, X.pumilius and X.rickii. Three new Xylodon species are described and illustrated, X.ussuriensis and X.crystalliger from East Asia and X.attenuatus from the Pacific Northwest America. The identity of X.nongravis, described from Sri Lanka, is discussed.Entities:
Keywords: Agaricomycetes ; Hyphodontia ; ITS; LSU; phylogeny
Year: 2018 PMID: 30386167 PMCID: PMC6207632 DOI: 10.3897/mycokeys.41.28987
Source DB: PubMed Journal: MycoKeys ISSN: 1314-4049 Impact factor: 2.984
Specimens and GenBank and UNITE accession numbers for DNA sequences used in this study.
| Species | Specimen voucher | GenBank or UNITE accession numbers for ITS | GenBank or UNITE accession numbers for LSU | Reference |
|---|---|---|---|---|
| Larsson 14646 |
|
| this study | |
| FR-0249548, Holotype |
|
|
| |
| Larsson 11731 |
|
|
| |
| MA- |
|
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| Larsson 12971 |
|
| ||
| KAS-GEL4833, Holotype |
|
|
| |
| TNM F24757, Holotype |
|
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| MSK7247, Holotype |
|
|
| |
| KAS-GEL3400 |
|
|
| |
| Ryberg 021018 |
|
|
| |
| KAS-GEL2414 |
|
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| KAS-JR7 |
|
|
| |
| TNM F973, Holotype |
|
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| Larsson 12261 |
|
| ||
| Canfield 180, Holotype |
|
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| H6013167 |
| Unpublished | ||
| KG Nilsson s. n. |
|
|
| |
| UC2023169 |
|
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| Wu 9211-71 |
|
|
| |
| Spirin 8775, Holotype |
| this study | ||
| Spirin 9416 |
|
| this study | |
| TU115575 |
| Unpublished | ||
| UC2022850 |
|
| ||
| KUN2352 |
|
| this study | |
| TU115495 |
| Unpublished | ||
| TU124171 |
| Unpublished | ||
| Cui 12887 |
|
| ||
| Wu 1307-42 |
|
| ||
| Wu 1407-105, Holotype |
|
| ||
| KUN2312, Holotype |
| this study | ||
| Zíbarová 30.10.17 |
|
| this study | |
| Zíbarová 26.05.17 |
|
| this study | |
| ICMP13836 |
|
| ||
| Ryvarden 19767, Holotype |
|
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| Wu 9209-27 |
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| Wu 0808-32 |
|
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| |
| Wu 890714-3, Holotype |
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| LWZ20160318-3, Holotype |
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| B Nordén 030915 |
|
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| GEL3158 |
|
|
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| GEL3290 |
| Unpublished | ||
| GEL3302 |
| Unpublished | ||
| GEL3309 |
|
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| GC 1508-146 |
|
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| GEL4998 |
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| Wu 1010-62 |
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| CHWC1506-2 |
|
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| Dai 11686 |
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| GC1412-22 |
|
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| Spirin 5763 |
|
| this study | |
| PDD:91630 |
|
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| ICMP13837 |
|
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| KUC20130725-29 |
|
|
| |
| Wu 0809-76 |
|
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| FCUG 1517 |
|
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| FCUG 2425 |
|
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| Miettinen 7978 |
|
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| Larsson 14653 |
| Unpublished | ||
| Spirin 2877 |
| this study | ||
| UC2023108 |
|
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| Dai 10768, Holotype |
|
| ||
| Kotiranta 27060 |
| this study | ||
| Larsson 11076 |
|
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| Miettinen 15050,1 |
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| Spirin 8565 |
| this study | ||
| Spirin 8840 |
| this study | ||
| Dai 12631 |
|
|
| |
| ICMP13833 |
|
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| Spirin 7664, Holotype |
|
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| GC 1512-1 |
|
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| Wu 1109-178, Holotype |
|
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| Dai 12354 |
|
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| CFMR:DLL2011-081 |
|
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| Ryberg 021031 |
|
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| UC2022842 |
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| UC2023109 |
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| UC2023147 |
|
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| UC2023148 |
|
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| GEL2690 |
|
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| Larsson 7085 |
|
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| Wu 1508-2 |
|
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| Wu 9806-105, Holotype |
|
| ||
| KUN1989, Holotype |
| this study |
Figure 1.Phylogenetic relationships of inferred from ITS sequences using Bayesian analysis. A 50% majority rule consensus phylogram. Bayesian posterior probabilities, ML bootstrap and MP bootstrap values are shown on nodes; branch lengths reflect estimated number of changes per site.
Figure 2.Phylogenetic relationships of inferred from ITS and LSU sequences using Bayesian analysis. A 50% majority rule consensus phylogram. Bayesian posterior probabilities, ML bootstrap and MP bootstrap values are shown on nodes; branch lengths reflect estimated number of changes per site.
Figure 3.(holotype): a section through an aculeus b basidia c subhymenial short-celled hyphae d cystidia e basidiospores.
Figure 4.(holotype): a section through an aculeus b apically encrusted hyphae from aculeal tips c basidiospores d basidia e cystidia f subhymenial hyphae.
Figure 5.Cystidial elements of : a Larsson 5496 b Zíbarová 26.V.2017 c Zíbarová 30.X.2017.
Figure 6.Basidiospores of two species in CB: a (Spirin 9994) b (isotype of ) c Zíbarová (26.V.2017).
Figure 7.Basidiocarp of (Zíbarová 26.V.2017). Scale bar: 5 mm.
Spore measurements of five species.
| Species / specimen | L' | L | W' | W | Q' | Q | n |
|---|---|---|---|---|---|---|---|
|
| (3.7) 4.1–5.5 (6) | 4.85 | (3) 3.4–4.5 (4.9) | 3.98 | (0.98) 1.06–1.38 (1.46) | 1.22 | 180 |
| Holotype | (4.3) 4.4–5.7 (5.8) | 4.86 | (3) 3.5–4.3 (4.7) | 3.84 | (1.1) 1.2–1.4 (1.5) | 1.27 | 30 |
| Spirin 8133 | (4.4) 4.54–5.3 (5.5) | 5.01 | (3.2) 3.8–4.6 (4.7) | 4.14 | (1.06) 1.1–1.33 (1.38) | 1.21 | 30 |
| Spirin 8286 | (4.1) 4.14–5.74 (6) | 4.98 | (3.1) 3.84–4.5 (4.5) | 4.11 | (1.02) 1.09–1.34 (1.36) | 1.21 | 30 |
| Spirin 8779 | (4) 4–5.2 (5.4) | 4.67 | (3) 3.2–4.3 (4.4) | 3.82 | (0.98) 1.04–1.38 (1.43) | 1.23 | 30 |
| Spirin 8900a | (3.7) 3.95–5.25 (5.6) | 4.56 | (3.4) 3.4–4.35 (4.9) | 3.94 | (1.02) 1.02–1.29 (1.37) | 1.16 | 30 |
| Spirin 8964 | (4.5) 4.6–5.6 (5.7) | 5.02 | (3.5) 3.6–4.3 (4.8) | 4.04 | (1.1) 1.1–1.4 (1.4) | 1.25 | 30 |
|
| (3.1) 4.2–5.1 (5.9) | 4.66 | (2.4) 3.3–4.2 (4.3) | 3.71 | (1) 1.1–1.4 (1.6) | 1.26 | 60 |
| Holotype | (3.1) 4.2–5.1 (5.9) | 4.63 | (2.4) 3.1–3.8 (3.9) | 3.5 | (1.2) 1.2–1.5 (1.6) | 1.32 | 30 |
| Bortnicov KUN 3347 | (4.2) 4.2–5.3 (5.5) | 4.69 | (3.3) 3.6–4.2 (4.3) | 3.91 | (1) 1.1–1.4 (1.4) | 1.2 | 30 |
|
| (3.3) 4.3–5.7 (6.1) | 4.92 | (3.1) 3.2–4.1 (4.5) | 3.69 | (0.7) 1.1–1.6 (1.8) | 1.34 | 190 |
| Lectotype | (4.2) 4.3–6 (6.1) | 5.07 | (3.1) 3.2–4 (4.1) | 3.59 | (1.2) 1.2–1.6 (1.7) | 1.42 | 39 |
| Larsson 5496 | (3.3) 4.2–5.5 (6) | 4.87 | (3.1) 3.2–4.1 (4.5) | 3.61 | (0.7) 1.1–1.6 (1.8) | 1.36 | 30 |
| Larsson 5622 | (4) 4.2–5.1 (5.5) | 4.6 | (3.3) 3.4–3.9 (4) | 3.63 | (1.1) 1.1–1.4 (1.5) | 1.27 | 30 |
| Larsson 5627 | (4) 4.2–5 (5.6) | 4.69 | (3.3) 3.3–4.1 (4.2) | 3.73 | (1.1) 1.2–1.4 (1.4) | 1.26 | 31 |
| Zibarova 26.V.2017 | (4.4) 4.7–5.8 (5.9) | 5.26 | (3.2) 3.3–4.2 (4.3) | 3.83 | (1.1) 1.2–1.6 (1.7) | 1.38 | 30 |
| Zibarova 30.X.2017 | (4.2) 4.2–5.7 (5.9) | 4.99 | (3.2) 3.3–4.1 (4.2) | 3.78 | (1.1) 1.1–1.5 (1.7) | 1.32 | 30 |
|
| (4) 4.5–5.9 (7) | 5.09 | (3.3) 3.7–4.8 (5.7) | 4.12 | (0.8) 1.1–1.4 (1.5) | 1.24 | 192 |
| Holotype of | (4.6) 4.7–6 (7) | 5.26 | (3.5) 3.8–5 (5.3) | 4.32 | (1) 1.1–1.4 (1.4) | 1.22 | 31 |
| Holotype of | (4) 4.1–5.7 (5.9) | 4.95 | (3.5) 3.6–4.5 (4.6) | 4.03 | (1.1) 1.1–1.4 (1.4) | 1.23 | 40 |
| Spirin 2877 | (4.5) 4.7–6.1 (6.3) | 5.28 | (3.5) 3.8–5 (5.2) | 4.21 | (1) 1.1–1.4 (1.5) | 1.26 | 30 |
| Spirin 9350 | (4.4) 4.7–5.7 (6.2) | 5.21 | (3.5) 3.8–4.8 (5.7) | 4.17 | (0.8) 1.1–1.4 (1.5) | 1.26 | 31 |
| Spirin 9581 | (4.2) 4.2–5.8 (6.1) | 4.99 | (3.3) 3.6–4.4 (4.6) | 3.98 | (1) 1.1–1.4 (1.4) | 1.25 | 30 |
| Spirin 9994 | (4.2) 4.6–5.1 (5.3) | 4.89 | (3.5) 3.6–4.5 (4.6) | 4.04 | (1.1) 1.1–1.3 (1.4) | 1.21 | 30 |
| Holotype of | (4) 4.3–5.5 (5.6) | 4.92 | (3.1) 3.1–4 (4.2) | 3.68 | (1.1) 1.1–1.6 (1.7) | 1.35 | 30 |
|
| (4.8) 5.1–6 (6.2) | 5.48 | (3.7) 3.8–4.6 (4.8) | 4.21 | (1.2) 1.2–1.4 (1.5) | 1.3 | 92 |
| Holotype | (4.9) 5.1–5.9 (6.2) | 5.48 | (3.7) 3.8–4.6 (4.8) | 4.22 | (1.2) 1.2–1.4 (1.4) | 1.3 | 32 |
| Viner KUN 2103 | (4.8) 5–6.1 (6.2) | 5.6 | (3.8) 3.8–4.7 (4.7) | 4.24 | (1.2) 1.2–1.4 (1.5) | 1.32 | 30 |
| Viner KUN 2186 | (5) 5–5.7 (5.8) | 5.37 | (3.8) 4–4.5 (4.6) | 4.18 | (1.2) 1.2–1.4 (1.5) | 1.28 | 30 |
Measurements of cystidial elements of and .
| Species / specimen | L' | L | W' | W | n |
|---|---|---|---|---|---|
|
| (30) 58.9–110 (115) | 85 | (4) 4.1–8.5 (9.6) | 6.3 | 120 |
| Lectotype | (67) 69.9–96.7 (110) | 83.8 | (4) 4–9.1 (9.2) | 6.5 | 20 |
| Larsson 5496 | (30) 45.2–108.2 (112) | 81.2 | (4.1) 4.3–7 (7.2) | 5.7 | 20 |
| Larsson 5622 | (30) 45–103 (110) | 82.7 | (4.1) 4.3–7.5 (8.5) | 5.7 | 20 |
| Larsson 5627 | (56) 58.7–104.6 (110) | 79.1 | (4.4) 4.8–8.9 (9.6) | 6.4 | 20 |
| Zibarova 26.V.2017 | (80) 83.8–103.3 (110) | 95.1 | (4) 5.4–8.1 (8.5) | 7.1 | 20 |
| Zibarova 30.X.2017 | (67) 73.7–112.2 (115) | 87.7 | (4) 5–7.4 (7.5) | 6.3 | 20 |
|
| (35) 44–84 (107) | 61.9 | (4) 4.9–10.9 (12.4) | 7.2 | 146 |
| Holotype of | (41) 43–95 (99) | 64 | (4) 5–12 (12) | 7.7 | 21 |
| Isolectotype of | (43) 45.9–80.4 (107) | 64 | (4.6) 5.3–10.6 (12.4) | 7.3 | 20 |
| Spirin 2877 | (35) 42.6–80 (80) | 58.4 | (4) 4.8–7.9 (8) | 6.2 | 20 |
| Spirin 9350 | (41) 44.8–83.2 (86) | 61.8 | (4.6) 4.7–10 (10.7) | 7.2 | 20 |
| Spirin 9581 | (49) 51.8–84.1 (86) | 64.6 | (4.9) 5–9 (11) | 7.1 | 20 |
| Spirin 9994 | (45) 45.8–75.3 (81) | 58.9 | (5.3) 5.6–10.2 (10.8) | 7.8 | 20 |
| Isotype of | (48) 51–95 (104) | 75.8 | (4.1) 6–12 (14) | 8.4 | 25 |
Figure 8.Cystidial elements and basidia of (isotype of ).
Figure 9.Basidiocarp of (Spirin 5763). Scale bar: 5 mm.
Figure 10.Cystidial elements of : a Spirin 9581 b Spirin 2877 c holotype of .
Figure 11.Basidiocarp of (Spirin 2877). Scale bar: 5 mm.
Figure 12.(holotype): a section through an aculeus b basidia, basidioles and hymenial cystidia c thick- and thin-wall tramal cystidia d thick- and thin-wall subhymenial cystidia e astrocystidia f basidiospores h short-celled hyphae from aculei.