Literature DB >> 30382457

Learning deep similarity metric for 3D MR-TRUS image registration.

Grant Haskins1, Jochen Kruecker2, Uwe Kruger1, Sheng Xu3, Peter A Pinto3, Brad J Wood3, Pingkun Yan4.   

Abstract

PURPOSE: The fusion of transrectal ultrasound (TRUS) and magnetic resonance (MR) images for guiding targeted prostate biopsy has significantly improved the biopsy yield of aggressive cancers. A key component of MR-TRUS fusion is image registration. However, it is very challenging to obtain a robust automatic MR-TRUS registration due to the large appearance difference between the two imaging modalities. The work presented in this paper aims to tackle this problem by addressing two challenges: (i) the definition of a suitable similarity metric and (ii) the determination of a suitable optimization strategy.
METHODS: This work proposes the use of a deep convolutional neural network to learn a similarity metric for MR-TRUS registration. We also use a composite optimization strategy that explores the solution space in order to search for a suitable initialization for the second-order optimization of the learned metric. Further, a multi-pass approach is used in order to smooth the metric for optimization.
RESULTS: The learned similarity metric outperforms the classical mutual information and also the state-of-the-art MIND feature-based methods. The results indicate that the overall registration framework has a large capture range. The proposed deep similarity metric-based approach obtained a mean TRE of 3.86 mm (with an initial TRE of 16 mm) for this challenging problem.
CONCLUSION: A similarity metric that is learned using a deep neural network can be used to assess the quality of any given image registration and can be used in conjunction with the aforementioned optimization framework to perform automatic registration that is robust to poor initialization.

Entities:  

Keywords:  Convolutional neural networks; Image registration; Image-guided interventions; Multimodal image fusion; Prostate cancer

Mesh:

Year:  2018        PMID: 30382457      PMCID: PMC7641874          DOI: 10.1007/s11548-018-1875-7

Source DB:  PubMed          Journal:  Int J Comput Assist Radiol Surg        ISSN: 1861-6410            Impact factor:   2.924


  17 in total

1.  Multimodality image registration by maximization of mutual information.

Authors:  F Maes; A Collignon; D Vandermeulen; G Marchal; P Suetens
Journal:  IEEE Trans Med Imaging       Date:  1997-04       Impact factor: 10.048

Review 2.  Deep learning.

Authors:  Yann LeCun; Yoshua Bengio; Geoffrey Hinton
Journal:  Nature       Date:  2015-05-28       Impact factor: 49.962

3.  Efficient convex optimization approach to 3D non-rigid MR-TRUS registration.

Authors:  Yue Sun; Jing Yuan; Martin Rajchl; Wu Qiu; Cesare Romagnoli; Aaron Fenster
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

4.  Automatic ultrasound-MRI registration for neurosurgery using the 2D and 3D LC(2) Metric.

Authors:  Bernhard Fuerst; Wolfgang Wein; Markus Müller; Nassir Navab
Journal:  Med Image Anal       Date:  2014-05-02       Impact factor: 8.545

5.  Biomechanically Constrained Surface Registration: Application to MR-TRUS Fusion for Prostate Interventions.

Authors:  Siavash Khallaghi; C Antonio Sánchez; Abtin Rasoulian; Yue Sun; Farhad Imani; Amir Khojaste; Orcun Goksel; Cesare Romagnoli; Hamidreza Abdi; Silvia Chang; Parvin Mousavi; Aaron Fenster; Aaron Ward; Sidney Fels; Purang Abolmaesumi
Journal:  IEEE Trans Med Imaging       Date:  2015-06-03       Impact factor: 10.048

6.  Comparison of MR/ultrasound fusion-guided biopsy with ultrasound-guided biopsy for the diagnosis of prostate cancer.

Authors:  M Minhaj Siddiqui; Soroush Rais-Bahrami; Baris Turkbey; Arvin K George; Jason Rothwax; Nabeel Shakir; Chinonyerem Okoro; Dima Raskolnikov; Howard L Parnes; W Marston Linehan; Maria J Merino; Richard M Simon; Peter L Choyke; Bradford J Wood; Peter A Pinto
Journal:  JAMA       Date:  2015-01-27       Impact factor: 56.272

7.  Fully Automated Prostate Magnetic Resonance Imaging and Transrectal Ultrasound Fusion via a Probabilistic Registration Metric.

Authors:  Rachel Sparks; B Nicolas Bloch; Ernest Feleppa; Dean Barratt; Anant Madabhushi
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2013-03-08

8.  Validation of MRI to TRUS registration for high-dose-rate prostate brachytherapy.

Authors:  Eric Poulin; Karim Boudam; Csaba Pinter; Samuel Kadoury; Andras Lasso; Gabor Fichtinger; Cynthia Ménard
Journal:  Brachytherapy       Date:  2018-01-10       Impact factor: 2.362

9.  Magnetic resonance imaging/ultrasound fusion guided prostate biopsy improves cancer detection following transrectal ultrasound biopsy and correlates with multiparametric magnetic resonance imaging.

Authors:  Peter A Pinto; Paul H Chung; Ardeshir R Rastinehad; Angelo A Baccala; Jochen Kruecker; Compton J Benjamin; Sheng Xu; Pingkun Yan; Samuel Kadoury; Celene Chua; Julia K Locklin; Baris Turkbey; Joanna H Shih; Stacey P Gates; Carey Buckner; Gennady Bratslavsky; W Marston Linehan; Neil D Glossop; Peter L Choyke; Bradford J Wood
Journal:  J Urol       Date:  2011-08-17       Impact factor: 7.450

10.  Changes in prostate cancer detection rate of MRI-TRUS fusion vs systematic biopsy over time: evidence of a learning curve.

Authors:  B Calio; A Sidana; D Sugano; S Gaur; A Jain; M Maruf; S Xu; P Yan; J Kruecker; M Merino; P Choyke; B Turkbey; B Wood; P Pinto
Journal:  Prostate Cancer Prostatic Dis       Date:  2017-08-01       Impact factor: 5.554

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  13 in total

1.  Automatic large quantity landmark pairs detection in 4DCT lung images.

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Journal:  Med Phys       Date:  2019-08-07       Impact factor: 4.071

2.  Automatic segmentation of brain tumor resections in intraoperative ultrasound images using U-Net.

Authors:  François-Xavier Carton; Matthieu Chabanas; Florian Le Lann; Jack H Noble
Journal:  J Med Imaging (Bellingham)       Date:  2020-02-18

Review 3.  Recent advances and clinical applications of deep learning in medical image analysis.

Authors:  Xuxin Chen; Ximin Wang; Ke Zhang; Kar-Ming Fung; Theresa C Thai; Kathleen Moore; Robert S Mannel; Hong Liu; Bin Zheng; Yuchen Qiu
Journal:  Med Image Anal       Date:  2022-04-04       Impact factor: 13.828

4.  Deep adaptive registration of multi-modal prostate images.

Authors:  Hengtao Guo; Melanie Kruger; Sheng Xu; Bradford J Wood; Pingkun Yan
Journal:  Comput Med Imaging Graph       Date:  2020-07-31       Impact factor: 4.790

5.  Deformable registration of PET/CT and ultrasound for disease-targeted focal prostate brachytherapy.

Authors:  Sharmin Sultana; Daniel Y Song; Junghoon Lee
Journal:  J Med Imaging (Bellingham)       Date:  2019-09-12

Review 6.  Image registration in dynamic renal MRI-current status and prospects.

Authors:  Frank G Zöllner; Amira Šerifović-Trbalić; Gordian Kabelitz; Marek Kociński; Andrzej Materka; Peter Rogelj
Journal:  MAGMA       Date:  2019-10-09       Impact factor: 2.310

7.  A holistic overview of deep learning approach in medical imaging.

Authors:  Rammah Yousef; Gaurav Gupta; Nabhan Yousef; Manju Khari
Journal:  Multimed Syst       Date:  2022-01-21       Impact factor: 2.603

Review 8.  Artificial intelligence with deep learning in nuclear medicine and radiology.

Authors:  Milan Decuyper; Jens Maebe; Roel Van Holen; Stefaan Vandenberghe
Journal:  EJNMMI Phys       Date:  2021-12-11

9.  Image registration: Maximum likelihood, minimum entropy and deep learning.

Authors:  Alireza Sedghi; Lauren J O'Donnell; Tina Kapur; Erik Learned-Miller; Parvin Mousavi; William M Wells
Journal:  Med Image Anal       Date:  2020-12-18       Impact factor: 8.545

10.  Real-time multimodal image registration with partial intraoperative point-set data.

Authors:  Zachary M C Baum; Yipeng Hu; Dean C Barratt
Journal:  Med Image Anal       Date:  2021-09-21       Impact factor: 8.545

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