Literature DB >> 30382100

Anomalous X-ray diffraction studies of ion transport in K+ channels.

Patricia S Langan1,2, Venu Gopal Vandavasi1,3, Kevin L Weiss1, Pavel V Afonine4,5, Kamel El Omari6, Ramona Duman6, Armin Wagner6, Leighton Coates7.   

Abstract

Potassium ion channels utilize a highly selective filter to rapidly transport K+ ions across cellular membranes. This selectivity filter is composed of four binding sites which display almost equal electron density in crystal structures with high potassium ion concentrations. This electron density can be interpreted to reflect a superposition of alternating potassium ion and water occupied states or as adjacent potassium ions. Here, we use single wavelength anomalous dispersion (SAD) X-ray diffraction data collected near the potassium absorption edge to show experimentally that all ion binding sites within the selectivity filter are fully occupied by K+ ions. These data support the hypothesis that potassium ion transport occurs by direct Coulomb knock-on, and provide an example of solving the phase problem by K-SAD.

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Year:  2018        PMID: 30382100      PMCID: PMC6208422          DOI: 10.1038/s41467-018-06957-w

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  32 in total

1.  Energetics of ion conduction through the K+ channel.

Authors:  S Bernèche; B Roux
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

2.  Energetic optimization of ion conduction rate by the K+ selectivity filter.

Authors:  J H Morais-Cabral; Y Zhou; R MacKinnon
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

3.  The occupancy of ions in the K+ selectivity filter: charge balance and coupling of ion binding to a protein conformational change underlie high conduction rates.

Authors:  Yufeng Zhou; Roderick MacKinnon
Journal:  J Mol Biol       Date:  2003-11-07       Impact factor: 5.469

4.  PyMOL and Inkscape Bridge the Data and the Data Visualization.

Authors:  Shuguang Yuan; H C Stephen Chan; Slawomir Filipek; Horst Vogel
Journal:  Structure       Date:  2016-12-06       Impact factor: 5.006

5.  Instantaneous ion configurations in the K+ ion channel selectivity filter revealed by 2D IR spectroscopy.

Authors:  Huong T Kratochvil; Joshua K Carr; Kimberly Matulef; Alvin W Annen; Hui Li; Michał Maj; Jared Ostmeyer; Arnaldo L Serrano; H Raghuraman; Sean D Moran; J L Skinner; Eduardo Perozo; Benoît Roux; Francis I Valiyaveetil; Martin T Zanni
Journal:  Science       Date:  2016-09-02       Impact factor: 47.728

6.  Experimental phasing with SHELXC/D/E: combining chain tracing with density modification.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Towards automated crystallographic structure refinement with phenix.refine.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Nathaniel Echols; Jeffrey J Headd; Nigel W Moriarty; Marat Mustyakimov; Thomas C Terwilliger; Alexandre Urzhumtsev; Peter H Zwart; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16

9.  The barium site in a potassium channel by x-ray crystallography.

Authors:  Y Jiang; R MacKinnon
Journal:  J Gen Physiol       Date:  2000-03       Impact factor: 4.086

10.  Filter gate closure inhibits ion but not water transport through potassium channels.

Authors:  Torben Hoomann; Nadin Jahnke; Andreas Horner; Sandro Keller; Peter Pohl
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-10       Impact factor: 11.205

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  14 in total

1.  Crystallization of a potassium ion channel and X-ray and neutron data collection.

Authors:  Patricia S Langan; Venu Gopal Vandavasi; Brendan Sullivan; Joel Harp; Kevin Weiss; Leighton Coates
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-05-21       Impact factor: 1.056

2.  IR Spectroscopy Can Reveal the Mechanism of K+ Transport in Ion Channels.

Authors:  Steven E Strong; Nicholas J Hestand; Alexei A Kananenka; Martin T Zanni; J L Skinner
Journal:  Biophys J       Date:  2019-11-20       Impact factor: 4.033

3.  The conduction pathway of potassium channels is water free under physiological conditions.

Authors:  Carl Öster; Kitty Hendriks; Wojciech Kopec; Veniamin Chevelkov; Chaowei Shi; Dagmar Michl; Sascha Lange; Han Sun; Bert L de Groot; Adam Lange
Journal:  Sci Adv       Date:  2019-07-31       Impact factor: 14.136

4.  Conduction through a narrow inward-rectifier K+ channel pore.

Authors:  Harald Bernsteiner; Eva-Maria Zangerl-Plessl; Xingyu Chen; Anna Stary-Weinzinger
Journal:  J Gen Physiol       Date:  2019-09-11       Impact factor: 4.000

Review 5.  Ion permeation in potassium ion channels.

Authors:  Leighton Coates
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-04-01       Impact factor: 7.652

6.  Atomistic basis of opening and conduction in mammalian inward rectifier potassium (Kir2.2) channels.

Authors:  Eva-Maria Zangerl-Plessl; Sun-Joo Lee; Grigory Maksaev; Harald Bernsteiner; Feifei Ren; Peng Yuan; Anna Stary-Weinzinger; Colin G Nichols
Journal:  J Gen Physiol       Date:  2020-01-06       Impact factor: 4.000

7.  Thermodynamics of ion binding and occupancy in potassium channels.

Authors:  Zhifeng Jing; Joshua A Rackers; Lawrence R Pratt; Chengwen Liu; Susan B Rempe; Pengyu Ren
Journal:  Chem Sci       Date:  2021-06-02       Impact factor: 9.825

8.  The structure of a potassium-selective ion channel reveals a hydrophobic gate regulating ion permeation.

Authors:  Patricia S Langan; Venu Gopal Vandavasi; Wojciech Kopec; Brendan Sullivan; Pavel V Afonne; Kevin L Weiss; Bert L de Groot; Leighton Coates
Journal:  IUCrJ       Date:  2020-07-25       Impact factor: 4.769

9.  Identifying dynamic, partially occupied residues using anomalous scattering.

Authors:  Serena Rocchio; Ramona Duman; Kamel El Omari; Vitaliy Mykhaylyk; Christian Orr; Zhen Yan; Loïc Salmon; Armin Wagner; James C A Bardwell; Scott Horowitz
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-11-19       Impact factor: 7.652

10.  K2P channel C-type gating involves asymmetric selectivity filter order-disorder transitions.

Authors:  Marco Lolicato; Andrew M Natale; Fayal Abderemane-Ali; David Crottès; Sara Capponi; Ramona Duman; Armin Wagner; John M Rosenberg; Michael Grabe; Daniel L Minor
Journal:  Sci Adv       Date:  2020-10-30       Impact factor: 14.957

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