| Literature DB >> 30381605 |
Xue-Ying Qin1, Juan Juan1, Xiao Xiang1, Ying-Qi Wei2, Shang-Wei Zuo3, Tao Huang1, Da-Fang Chen1, Roger Marshall4, Jiang Xiong3, Wei Guo3, Yong-Hua Hu1.
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Year: 2018 PMID: 30381605 PMCID: PMC6213834 DOI: 10.4103/0366-6999.244124
Source DB: PubMed Journal: Chin Med J (Engl) ISSN: 0366-6999 Impact factor: 2.628
Figure 1The flow chart of the study design. *rs1130864 was excluded from the data analysis for its high linkage disequilibrium with rs1417938; †rs1417938 was not used as an instrumental variable individually because its extremely low F-statistic in the first stage of MR analysis, but it was included into the genetic score. MR: Mendelian randomization.
Pairwise linkage disequilibrium matrix for SNPs in the CRP gene
| Items | rs1417938 | rs1800947 | rs1130864 | rs1205 |
|---|---|---|---|---|
| rs1417938 | 1.000 | 0.020 | 0.962 | 0.191 |
| rs1800947 | 0.020 | 1.000 | 0.021 | 0.106 |
| rs1130864 | 0.962 | 0.021 | 1.000 | 0.198 |
| rs1205 | 0.191 | 0.106 | 0.198 | 1.000 |
Data on estimates of pairwise linkage disequilibrium metrics were obtained from SNAP. http://www.broadinstitute.org/mpg/snap/index.php. Values represent r2 values, a measure of linkage disequilibrium. r2 values range from 0 to 1; with 0 representing complete equilibrium and 1 representing complete disequilibrium. SNAP: SNP annotation and proxy search; SNP: Single nucleotides polymorphisms; CRP: C-reactive protein.
F-statistics for first stage regression of MR analysis using different instrumental variables
| Optional instrumental variables | |
|---|---|
| rs1417938 | 0.21 |
| rs1800947 | 7.07 |
| rs1205 | 14.15 |
| Genetic score (binary variable) | 19.30 |
| Genetic score (continuous variable) | 22.33 |
MR: Mendelian randomization.
Basic characteristics of the study participants
| Characteristics | Case group ( | Control groups ( | ||
|---|---|---|---|---|
| Control group from hospital ( | Control group from community ( | |||
| Age (years), mean ± SD | 69.2 ± 10.0 | 69.6 ± 10.9 | 69.5 ± 9.0 | 0.727 |
| Female, | 17 (11.0) | 17 (11.0) | 17 (11.0) | 1.000 |
| Smoker, | 132 (85.2) | 69 (44.5) | 98 (63.2) | <0.001 |
| Drinker, | 79 (51.0) | 58 (37.4) | 67 (43.2) | 0.029 |
| Physical activity, | 94 (60.7) | 87 (56.1) | 108 (69.7) | 0.530 |
| History of chronic diseases, | ||||
| Hypertension | 108 (70.0) | 64 (41.3) | 79 (51.6) | <0.001 |
| Type 2 diabetes | 18 (11.6) | 27 (17.4) | 19 (12.4) | 0.341 |
| Hyperlipidemia | 76 (49.0) | 34 (21.9) | 27 (17.4) | <0.001 |
| BMI (kg/m2)†, mean ± SD | 24.4 ± 3.4 | 25.3 ± 3.2 | 24.2 ± 3.5 | 0.338 |
| LnCRP (mg/L), median, (Q1,Q3) | −1.3 (−2.3, 0.02) | −2.2 (−2.8, −1.0) | −1.5 (−1.6, −1.3) | 0.014 |
| rs1417638, | ||||
| AT | 12 (8.0) | 20 (13.1) | 26 (17.2) | 0.030 |
| TT | 139 (92.1) | 133 (87.0) | 125 (82.8) | |
| rs1800947, | ||||
| CC | 0 (0) | 1 (0.7) | 1 (0.7) | 0.607 |
| CG | 8 (5.3) | 8 (5.2) | 8 (5.3) | |
| GG | 143 (94.7) | 144 (94.1) | 142 (94.3) | |
| rs1205, | ||||
| CC | 23 (15.3) | 31 (20.4) | 22 (14.7) | 0.801 |
| CT | 76 (50.7) | 73 (48.0) | 80 (53.3) | |
| TT | 51 (34.0) | 48 (31.6) | 48 (32.0) | |
*P values were calculated by comparing characteristics between AAA and all controls; †The BMI is the weight in kilograms divided by the square of the height in meters. BMI: Body mass index; SD: Standard deviation; CRP: C-reactive protein; IQR: Interquartile range; AAA: Abdominal aortic aneurysm; LnCRP: Consentrations of CRP that were natural log transformed.
Basic characteristics of the participants, according to genotype of rs1417938
| Items | AT ( | TT ( | |
|---|---|---|---|
| Age (years), mean ± SD | 66.8 ± 10.5 | 69.7 ± 9.9 | 0.035 |
| Female sex (%) | 10.3 | 10.6 | 0.957 |
| Han nation (%) | 1.7 | 2.0 | 0.882 |
| Smoker (%) | 63.8 | 64.0 | 0.978 |
| Drinker (%) | 46.6 | 44.3 | 0.751 |
| Physical activity (%) | 63.8 | 67.3 | 0.601 |
| History of chronic disease (%) | |||
| Hypertension | 46.6 | 55.2 | 0.219 |
| Diabetes | 19.0 | 13.4 | 0.251 |
| Hyperlipidemia | 20.7 | 31.0 | 0.109 |
| BMI (kg/m2), mean ± SD* | 25.8 ± 2.9 | 24.5 ± 3.4 | 0.005 |
| LnCRP (mg/L), median (Q1,Q3) | −1.6 (−1.9, −1.2) | −1.5 (−2.2, −0.9) | 0.545 |
*The BMI is the weight in kilograms divided by the square of the height in meters. BMI: Body mass index; SD: Standard deviation; IQR: Interquartile range; CRP: C-reactive protein.
Basic characteristics of the participants, according to the genetic risk score
| Characterostics | Genetic score below median* ( | Genetic score above median* ( | |
|---|---|---|---|
| Age (years), mean ± SD | 68.8 ± 10.4 | 69.8 ± 9.6 | 0.315 |
| Female sex (%) | 8.9 | 11.9 | 0.295 |
| Han nation (%) | 3.1 | 1.2 | 0.138 |
| Smoker (%) | 65.6 | 62.7 | 0.521 |
| Drinker (%) | 45.3 | 44.2 | 0.819 |
| Physical activity (%) | 66.7 | 66.9 | 0.954 |
| History of chronic disease (%) | |||
| Hypertension | 50.0 | 56.9 | 0.144 |
| Diabetes | 13.0 | 14.6 | 0.629 |
| Hyperlipidemia | 26.0 | 32.3 | 0.149 |
| BMI (kg/m2), mean ± SD† | 25.0 ± 3.3 | 24.4 ± 3.4 | 0.078 |
| LnCRP (mg/L), median (Q1,Q3) | −1.6 (−2.4, −1.3) | −1.5 (−1.9, −0.7) | <0.001 |
*The median of genetic score was 5. Genetic score below median: Genetic score <5; genetic score above the median: genetic score ≥5. Of all the participants, 13 had missing data for SNPs and were excluded from the analysis for the need to construct the genetic score, †The BMI is the weight in kilograms divided by the square of the height in meters. BMI: Body mass index; SD: Standard deviation; CRP: C-reactive protein; SNP: Single nucleotides polymorphisms.
Minor allelic frequencies for CRP SNPs in different groups of the study population
| Major homozygote | Heterozygote | Minor homozygote | Minor allele frequency | |
|---|---|---|---|---|
| Control group from community | ||||
| rs1417938 | 125 (TT, 83.5%) | 26 (AT, 15.7%) | 0 (AA, 0.7%) | 0.086 |
| rs1800947 | 142 (GG, 93.5%) | 8 (CG, 6.4%) | 1 (CC, 0.1%) | 0.033 |
| rs1205 | 48 (TT, 34.4%) | 80 (CT, 48.5%) | 22 (CC, 17.1%) | 0.413 |
| Control group from community | ||||
| rs1417938 | 133 (TT, 87.4%) | 20 (AT, 12.2%) | 0 (AA, 0.4%) | 0.065 |
| rs1800947 | 144 (GG, 93.6%) | 8 (CG, 6.3%) | 1 (CC, 0.1%) | 0.033 |
| rs1205 | 48 (TT, 30.9%) | 73 (CT, 49.4%) | 31 (CC, 19.7%) | 0.444 |
| Cases group | ||||
| rs1417938 | 139 (TT, 92.2%) | 12 (AT, 7.6%) | 0 (AA, 0.2%) | 0.040 |
| rs1800947 | 143 (GG, 94.8%) | 8 (CG, 5.2%) | 0 (CC, 0.1%) | 0.026 |
| rs1205 | 51 (TT, 35.2%) | 76 (CT, 48.3%) | 23 (CC, 16.5%) | 0.407 |
CRP: C-reactive protein; SNP: Single nucleotides polymorphisms.
Figure 2Effect of genetically elevated CRP levels on abdominal aortic aneurysm using MR approach in a Chinese population. *Mean difference in LnCRP was assessed using regression model with genetic variants and genetic score as repressors, respectively; †OR was for the association and was estimated from the instrumental variable analysis by using genetic variants and genetic score as instrumental variables, respectively. No other covariates were adjusted in the MR model. CRP: C-reactive protein; MR: Mendelian randomization; OR: Odds ratio.
The effect size between LnCRP and AAA estimated from the conventional multivariate model and instrumental variable analysis
| Items | Instrumental variable analysis | Observational multivariable | ||||
|---|---|---|---|---|---|---|
| 95% | 95% | |||||
| Model 1* | 1.203 | 0.574–2.519 | 0.625 | 1.357 | 1.163–1.583 | <0.001 |
| Model 2* | 1.291 | 0.606–2.754 | 0.508 | 1.276 | 1.085–1.502 | 0.003 |
| Model 3* | 1.132 | 0.480–2.667 | 0.777 | 1.249 | 1.049–1.489 | 0.013 |
*Model 1: Adjusted for age and gender; Model 2: Adjusted for ever smoked, ever drunk, and physical activity based on Model 1; Model 3: Adjusted for BMI and history of hypertension; diabetes, and hyperlipidemia based on Model 2. OR: Odds ratio; CI: Confidence interval; CRP: C-reactive protein; AAA: Abdominal aortic aneurysm.
Basic characteristics of the participants, according to genotype of rs1800947
| Characteristics | CC/CG ( | GG ( | |
|---|---|---|---|
| Age (years), mean ± SD | 69.0 ± 10.4 | 69.4 ± 10.0 | 0.830 |
| Female sex (%) | 11.5 | 10.5 | 0.866 |
| Han nation (%) | 3.9 | 1.9 | 0.481 |
| Smoker (%) | 61.5 | 64.1 | 0.791 |
| Drinker (%) | 26.9 | 45.7 | 0.062 |
| Physical activity (%) | 65.4 | 66.9 | 0.873 |
| History of chronic disease (%) | |||
| Hypertension | 57.8 | 53.9 | 0.702 |
| Diabetes | 19.2 | 13.8 | 0.435 |
| Hyperlipidemia | 30.8 | 29.6 | 0.899 |
| BMI (kg/m2), mean ± SD* | 24.9 ± 2.8 | 24.6 ± 3.4 | 0.718 |
| LnCRP (mg/L), median (Q1,Q3) | −2.3 (−3.0, −1.6) | −1.5 (−2.2, −1.0) | 0.004 |
*The BMI is the weight in kilograms divided by the square of the height in meters. BMI: Body mass index; SD: Standard deviation; CRP: C-reactive protein.
Basic characteristics of the participants, according to genotype of rs1205
| Characteristics | TT ( | CT ( | CC ( | |
|---|---|---|---|---|
| Age (years), mean ± SD | 69.4 ± 9.8 | 69.6 ± 9.8 | 70.8 ± 7.7 | 0.918 |
| Female sex (%) | 7.5 | 12.7 | 10.5 | 0.282 |
| Han nation (%) | 2.7 | 1.3 | 2.6 | 0.575 |
| Smoker (%) | 68.0 | 62.0 | 61.8 | 0.454 |
| Drinker (%) | 44.9 | 47.6 | 35.5 | 0.186 |
| Physical activity (%) | 67.4 | 66.8 | 65.8 | 0.973 |
| History of chronic disease (%) | ||||
| Hypertension | 50.3 | 56.3 | 54.0 | 0.524 |
| Diabetes | 10.9 | 14.9 | 17.1 | 0.380 |
| Hyperlipidemia | 27.2 | 32.3 | 26.3 | 0.448 |
| BMI (kg/m2), mean ± SD* | 24.6 ± 3.4 | 25.1 ± 3.6 | 23.1 ± 3.4 | 0.532 |
| LnCRP (mg/L), median (Q1,Q3) | −1.6 (−2.4, −1.2) | −1.5 (−2.1, −1.1) | −1.2 (−1.7, −0.3) | 0.0007 |
*The BMI is the weight in kilograms divided by the square of the height in meters. BMI: Body mass index; SD: Standard deviation; CRP: C-reactive protein.