Literature DB >> 30381005

Causal inference with multiple concurrent medications: A comparison of methods and an application in multidrug-resistant tuberculosis.

Arman Alam Siddique1, Mireille E Schnitzer2, Asma Bahamyirou2, Guanbo Wang3, Timothy H Holtz4, Giovanni B Migliori5, Giovanni Sotgiu6, Neel R Gandhi7, Mario H Vargas8,9, Dick Menzies10,11, Andrea Benedetti3,10,11.   

Abstract

This paper investigates different approaches for causal estimation under multiple concurrent medications. Our parameter of interest is the marginal mean counterfactual outcome under different combinations of medications. We explore parametric and non-parametric methods to estimate the generalized propensity score. We then apply three causal estimation approaches (inverse probability of treatment weighting, propensity score adjustment, and targeted maximum likelihood estimation) to estimate the causal parameter of interest. Focusing on the estimation of the expected outcome under the most prevalent regimens, we compare the results obtained using these methods in a simulation study with four potentially concurrent medications. We perform a second simulation study in which some combinations of medications may occur rarely or not occur at all in the dataset. Finally, we apply the methods explored to contrast the probability of patient treatment success for the most prevalent regimens of antimicrobial agents for patients with multidrug-resistant pulmonary tuberculosis.

Entities:  

Keywords:  Causal inference; concurrent medications; generalized propensity score; machine learning; multidrug-resistant tuberculosis; targeted maximum likelihood estimation

Mesh:

Year:  2018        PMID: 30381005      PMCID: PMC6511477          DOI: 10.1177/0962280218808817

Source DB:  PubMed          Journal:  Stat Methods Med Res        ISSN: 0962-2802            Impact factor:   3.021


  16 in total

1.  A comparison of methods for multiclass support vector machines.

Authors:  Chih-Wei Hsu; Chih-Jen Lin
Journal:  IEEE Trans Neural Netw       Date:  2002

2.  Implementation of G-computation on a simulated data set: demonstration of a causal inference technique.

Authors:  Jonathan M Snowden; Sherri Rose; Kathleen M Mortimer
Journal:  Am J Epidemiol       Date:  2011-03-16       Impact factor: 4.897

Review 3.  Multidrug resistant tuberculosis.

Authors:  James Millard; Cesar Ugarte-Gil; David A J Moore
Journal:  BMJ       Date:  2015-02-26

Review 4.  Clinical consequences of polypharmacy in elderly.

Authors:  Robert L Maher; Joseph Hanlon; Emily R Hajjar
Journal:  Expert Opin Drug Saf       Date:  2013-09-27       Impact factor: 4.250

5.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

6.  EFFECT OF BREASTFEEDING ON GASTROINTESTINAL INFECTION IN INFANTS: A TARGETED MAXIMUM LIKELIHOOD APPROACH FOR CLUSTERED LONGITUDINAL DATA.

Authors:  Mireille E Schnitzer; Mark J van der Laan; Erica E M Moodie; Robert W Platt
Journal:  Ann Appl Stat       Date:  2014-06       Impact factor: 2.083

7.  Constructing inverse probability weights for marginal structural models.

Authors:  Stephen R Cole; Miguel A Hernán
Journal:  Am J Epidemiol       Date:  2008-08-05       Impact factor: 4.897

8.  A tutorial on propensity score estimation for multiple treatments using generalized boosted models.

Authors:  Daniel F McCaffrey; Beth Ann Griffin; Daniel Almirall; Mary Ellen Slaughter; Rajeev Ramchand; Lane F Burgette
Journal:  Stat Med       Date:  2013-03-18       Impact factor: 2.373

9.  On regression adjustment for the propensity score.

Authors:  S Vansteelandt; R M Daniel
Journal:  Stat Med       Date:  2014-05-14       Impact factor: 2.373

10.  Multidrug resistant pulmonary tuberculosis treatment regimens and patient outcomes: an individual patient data meta-analysis of 9,153 patients.

Authors:  Shama D Ahuja; David Ashkin; Monika Avendano; Rita Banerjee; Melissa Bauer; Jamie N Bayona; Mercedes C Becerra; Andrea Benedetti; Marcos Burgos; Rosella Centis; Eward D Chan; Chen-Yuan Chiang; Helen Cox; Lia D'Ambrosio; Kathy DeRiemer; Nguyen Huy Dung; Donald Enarson; Dennis Falzon; Katherine Flanagan; Jennifer Flood; Maria L Garcia-Garcia; Neel Gandhi; Reuben M Granich; Maria G Hollm-Delgado; Timothy H Holtz; Michael D Iseman; Leah G Jarlsberg; Salmaan Keshavjee; Hye-Ryoun Kim; Won-Jung Koh; Joey Lancaster; Christophe Lange; Wiel C M de Lange; Vaira Leimane; Chi Chiu Leung; Jiehui Li; Dick Menzies; Giovanni B Migliori; Sergey P Mishustin; Carole D Mitnick; Masa Narita; Philly O'Riordan; Madhukar Pai; Domingo Palmero; Seung-kyu Park; Geoffrey Pasvol; Jose Peña; Carlos Pérez-Guzmán; Maria I D Quelapio; Alfredo Ponce-de-Leon; Vija Riekstina; Jerome Robert; Sarah Royce; H Simon Schaaf; Kwonjune J Seung; Lena Shah; Tae Sun Shim; Sonya S Shin; Yuji Shiraishi; José Sifuentes-Osornio; Giovanni Sotgiu; Matthew J Strand; Payam Tabarsi; Thelma E Tupasi; Robert van Altena; Martie Van der Walt; Tjip S Van der Werf; Mario H Vargas; Pirett Viiklepp; Janice Westenhouse; Wing Wai Yew; Jae-Joon Yim
Journal:  PLoS Med       Date:  2012-08-28       Impact factor: 11.069

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Authors:  S Arona Diop; Thierry Duchesne; Steven G Cumming; Awa Diop; Denis Talbot
Journal:  J Appl Stat       Date:  2021-04-07       Impact factor: 1.416

Review 2.  Use of Artificial Intelligence and Machine Learning for Discovery of Drugs for Neglected Tropical Diseases.

Authors:  David A Winkler
Journal:  Front Chem       Date:  2021-03-15       Impact factor: 5.221

3.  Modeling treatment effect modification in multidrug-resistant tuberculosis in an individual patientdata meta-analysis.

Authors:  Yan Liu; Mireille E Schnitzer; Guanbo Wang; Edward Kennedy; Piret Viiklepp; Mario H Vargas; Giovanni Sotgiu; Dick Menzies; Andrea Benedetti
Journal:  Stat Methods Med Res       Date:  2021-12-13       Impact factor: 3.021

4.  EA3: A softmax algorithm for evidence appraisal aggregation.

Authors:  Francesco De Pretis; Jürgen Landes
Journal:  PLoS One       Date:  2021-06-17       Impact factor: 3.240

5.  Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization.

Authors:  Emily Goren; Chong Wang; Zhulin He; Amy M Sheflin; Dawn Chiniquy; Jessica E Prenni; Susannah Tringe; Daniel P Schachtman; Peng Liu
Journal:  BMC Bioinformatics       Date:  2021-07-06       Impact factor: 3.169

  5 in total

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