Literature DB >> 30375061

Body size determines soil community assembly in a tropical forest.

Lucie Zinger1, Pierre Taberlet2, Heidy Schimann3, Aurélie Bonin2, Frédéric Boyer2, Marta De Barba2, Philippe Gaucher4, Ludovic Gielly2, Charline Giguet-Covex2, Amaia Iribar1, Maxime Réjou-Méchain1,5, Gilles Rayé2, Delphine Rioux2, Vincent Schilling1, Blaise Tymen1, Jérôme Viers6, Cyril Zouiten6, Wilfried Thuiller2, Eric Coissac2, Jérôme Chave1.   

Abstract

Tropical forests shelter an unparalleled biological diversity. The relative influence of environmental selection (i.e., abiotic conditions, biotic interactions) and stochastic-distance-dependent neutral processes (i.e., demography, dispersal) in shaping communities has been extensively studied for various organisms, but has rarely been explored across a large range of body sizes, in particular in soil environments. We built a detailed census of the whole soil biota in a 12-ha tropical forest plot using soil DNA metabarcoding. We show that the distribution of 19 taxonomic groups (ranging from microbes to mesofauna) is primarily stochastic, suggesting that neutral processes are prominent drivers of the assembly of these communities at this scale. We also identify aluminium, topography and plant species identity as weak, yet significant drivers of soil richness and community composition of bacteria, protists and to a lesser extent fungi. Finally, we show that body size, which determines the scale at which an organism perceives its environment, predicted the community assembly across taxonomic groups, with soil mesofauna assemblages being more stochastic than microbial ones. These results suggest that the relative contribution of neutral processes and environmental selection to community assembly directly depends on body size. Body size is hence an important determinant of community assembly rules at the scale of the ecological community in tropical soils and should be accounted for in spatial models of tropical soil food webs.
© 2018 John Wiley & Sons Ltd.

Entities:  

Keywords:  DNA metabarcoding; French Guiana; eDNA; multitaxa; neutral assembly; niche determinism; propagule size; soil diversity

Mesh:

Year:  2018        PMID: 30375061     DOI: 10.1111/mec.14919

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  20 in total

1.  Modelling selection, drift, dispersal and their interactions in the community assembly of Amazonian soil mites.

Authors:  Pedro A C L Pequeno; Elizabeth Franklin; Roy A Norton
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2.  Successive passaging of a plant-associated microbiome reveals robust habitat and host genotype-dependent selection.

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Review 3.  Soil Microbial Biogeography in a Changing World: Recent Advances and Future Perspectives.

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4.  Comparison of traditional and DNA metabarcoding samples for monitoring tropical soil arthropods (Formicidae, Collembola and Isoptera).

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5.  Lowland plant arrival in alpine ecosystems facilitates a decrease in soil carbon content under experimental climate warming.

Authors:  Tom W N Walker; Konstantin Gavazov; Thomas Guillaume; Thibault Lambert; Pierre Mariotte; Devin Routh; Constant Signarbieux; Sebastián Block; Tamara Münkemüller; Hanna Nomoto; Thomas W Crowther; Andreas Richter; Alexandre Buttler; Jake M Alexander
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6.  Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats.

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Journal:  Conserv Biol       Date:  2019-12-24       Impact factor: 6.560

7.  Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods.

Authors:  Philip Francis Thomsen; Eva E Sigsgaard
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8.  Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater.

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9.  GenBank is a reliable resource for 21st century biodiversity research.

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10.  Towards an integrative understanding of soil biodiversity.

Authors:  Madhav P Thakur; Helen R P Phillips; Ulrich Brose; Franciska T De Vries; Patrick Lavelle; Michel Loreau; Jerome Mathieu; Christian Mulder; Wim H Van der Putten; Matthias C Rillig; David A Wardle; Elizabeth M Bach; Marie L C Bartz; Joanne M Bennett; Maria J I Briones; George Brown; Thibaud Decaëns; Nico Eisenhauer; Olga Ferlian; Carlos António Guerra; Birgitta König-Ries; Alberto Orgiazzi; Kelly S Ramirez; David J Russell; Michiel Rutgers; Diana H Wall; Erin K Cameron
Journal:  Biol Rev Camb Philos Soc       Date:  2019-11-15
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