Literature DB >> 30374521

Regulatory network of miRNA on its target: coordination between transcriptional and post-transcriptional regulation of gene expression.

Mengfan Pu1,2, Jing Chen1, Zhouteng Tao1, Lingling Miao1, Xinming Qi1, Yizheng Wang3, Jin Ren4.   

Abstract

MicroRNAs (miRNAs) are a class of endogenous small noncoding RNAs that participate in a majority of biological processes via regulating target gene expression. The post-transcriptional repression through miRNA seed region binding to 3' UTR of target mRNA is considered as the canonical mode of miRNA-mediated gene regulation. However, emerging evidence suggests that other regulatory modes exist beyond the canonical mechanism. In particular, the function of intranuclear miRNA in gene transcriptional regulation is gradually revealed, with evidence showing their contribution to gene silencing or activating. Therefore, miRNA-mediated regulation of gene transcription not only expands our understanding of the molecular mechanism underlying miRNA regulatory function, but also provides new evidence to explain its ability in the sophisticated regulation of many bioprocesses. In this review, mechanisms of miRNA-mediated gene transcriptional and post-transcriptional regulation are summarized, and the synergistic effects among these actions which form a regulatory network of a miRNA on its target are particularly elaborated. With these discussions, we aim to emphasize the importance of miRNA regulatory network on target gene regulation and further highlight the potential application of the network mode in the achievement of a more effective and stable modulation of the target gene expression.

Keywords:  miRNA cellular distribution; miRNA non-seed sequence function; miRNA target recognition; miRNA-related nucleic acid drugs

Mesh:

Substances:

Year:  2018        PMID: 30374521     DOI: 10.1007/s00018-018-2940-7

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  81 in total

1.  Functional siRNAs and miRNAs exhibit strand bias.

Authors:  Anastasia Khvorova; Angela Reynolds; Sumedha D Jayasena
Journal:  Cell       Date:  2003-10-17       Impact factor: 41.582

Review 2.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

3.  Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs.

Authors:  Rui Yi; Yi Qin; Ian G Macara; Bryan R Cullen
Journal:  Genes Dev       Date:  2003-12-17       Impact factor: 11.361

4.  MicroRNA-directed cleavage of HOXB8 mRNA.

Authors:  Soraya Yekta; I-Hung Shih; David P Bartel
Journal:  Science       Date:  2004-04-23       Impact factor: 47.728

Review 5.  RNase III enzymes and the initiation of gene silencing.

Authors:  Michelle A Carmell; Gregory J Hannon
Journal:  Nat Struct Mol Biol       Date:  2004-03       Impact factor: 15.369

6.  Role for a bidentate ribonuclease in the initiation step of RNA interference.

Authors:  E Bernstein; A A Caudy; S M Hammond; G J Hannon
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

7.  The nuclear RNase III Drosha initiates microRNA processing.

Authors:  Yoontae Lee; Chiyoung Ahn; Jinju Han; Hyounjeong Choi; Jaekwang Kim; Jeongbin Yim; Junho Lee; Patrick Provost; Olof Rådmark; Sunyoung Kim; V Narry Kim
Journal:  Nature       Date:  2003-09-25       Impact factor: 49.962

8.  The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR.

Authors:  Monica C Vella; Eun-Young Choi; Shin-Yi Lin; Kristy Reinert; Frank J Slack
Journal:  Genes Dev       Date:  2004-01-16       Impact factor: 11.361

9.  Nuclear export of microRNA precursors.

Authors:  Elsebet Lund; Stephan Güttinger; Angelo Calado; James E Dahlberg; Ulrike Kutay
Journal:  Science       Date:  2003-11-20       Impact factor: 47.728

10.  Prediction of mammalian microRNA targets.

Authors:  Benjamin P Lewis; I-hung Shih; Matthew W Jones-Rhoades; David P Bartel; Christopher B Burge
Journal:  Cell       Date:  2003-12-26       Impact factor: 41.582

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  105 in total

Review 1.  Unraveling the Role of MicroRNAs in Mycobacterium tuberculosis Infection and Disease: Advances and Pitfalls.

Authors:  Cinthya Ruiz-Tagle; Rodrigo Naves; María Elvira Balcells
Journal:  Infect Immun       Date:  2020-02-20       Impact factor: 3.441

2.  Upregulation of miRNA-1228-3p alleviates TGF-β-induced fibrosis in renal tubular epithelial cells.

Authors:  Huajuan Shen; Qiang He; Yongze Dong; Lina Shao; Yueming Liu; Jianguang Gong
Journal:  Histol Histopathol       Date:  2020-07-28       Impact factor: 2.303

3.  Up-to-date on the evidence linking miRNA-related epitranscriptomic modifications and disease settings. Can these modifications affect cross-kingdom regulation?

Authors:  João Tomé-Carneiro; María-Carmen López de Las Hazas; Hatim Boughanem; Yvonne Böttcher; Akin Cayir; Manuel Macias González; Alberto Dávalos
Journal:  RNA Biol       Date:  2021-11-29       Impact factor: 4.652

4.  Identification of miR-135b as a novel regulator of TGFβ pathway in gastric cancer.

Authors:  Ming Bai; Peiyun Wang; Jiayu Yang; Mengsi Zuo; Yi Ba
Journal:  J Physiol Biochem       Date:  2020-07-31       Impact factor: 4.158

Review 5.  Deciphering the role of microRNAs in mustard gas-induced toxicity.

Authors:  Neha Mishra; Komal Raina; Rajesh Agarwal
Journal:  Ann N Y Acad Sci       Date:  2020-12-10       Impact factor: 5.691

6.  MiR-133a-3p relieves the oxidative stress induced trophoblast cell apoptosis through the BACH1/Nrf2/HO-1 signaling pathway.

Authors:  H Guo; Y Wang; W Jia; L Liu
Journal:  Physiol Res       Date:  2021-01-14       Impact factor: 1.881

7.  Upregulated PPARG2 facilitates interaction with demethylated AKAP12 gene promoter and suppresses proliferation in prostate cancer.

Authors:  Feng Li; Tingting Lu; Dongmei Liu; Chong Zhang; Yonghui Zhang; Fulu Dong
Journal:  Cell Death Dis       Date:  2021-05-22       Impact factor: 8.469

8.  Deacetylated-poly-N-acetylglucosamine-folic Acid as a Nanocarrier for Delivering miR-196a Inhibitor to Anticancer Activity.

Authors:  Yuxia Hao; Xi Li
Journal:  Balkan Med J       Date:  2022-01-25       Impact factor: 2.021

9.  Silencing of LINC00284 inhibits cell proliferation and migration in oral squamous cell carcinoma by the miR-211-3p/MAFG axis and FUS/KAZN axis.

Authors:  Dayong Yan; Fuhua Wu; Caixia Peng; Mei Wang
Journal:  Cancer Biol Ther       Date:  2021-02-22       Impact factor: 4.742

10.  Identification of key Genes and Pathways Associated With Thermal Stress in Peripheral Blood Mononuclear Cells of Holstein Dairy Cattle.

Authors:  Hao Fang; Ling Kang; Zaheer Abbas; Lirong Hu; Yumei Chen; Xiao Tan; Yachun Wang; Qing Xu
Journal:  Front Genet       Date:  2021-06-10       Impact factor: 4.599

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