Literature DB >> 30367310

Boosted feature selectors: a case study on prediction P-gp inhibitors and substrates.

Gonzalo Cerruela García1, Nicolás García-Pedrajas2.   

Abstract

Feature selection is commonly used as a preprocessing step to machine learning for improving learning performance, lowering computational complexity and facilitating model interpretation. This paper proposes the application of boosting feature selection to improve the classification performance of standard feature selection algorithms evaluated for the prediction of P-gp inhibitors and substrates. Two well-known classification algorithms, decision trees and support vector machines, were used to classify the chemical compounds. The experimental results showed better performance for boosting feature selection with respect to the standard feature selection algorithms while maintaining the capability for feature reduction.

Keywords:  Feature selection; Molecular activity prediction; P-gp inhibitors and substrates; QSAR

Mesh:

Substances:

Year:  2018        PMID: 30367310     DOI: 10.1007/s10822-018-0171-5

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  36 in total

1.  Unsupervised forward selection: a method for eliminating redundant variables.

Authors:  D C Whitley; M G Ford; D J Livingstone
Journal:  J Chem Inf Comput Sci       Date:  2000 Sep-Oct

2.  Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection.

Authors:  Alexander Golbraikh; Alexander Tropsha
Journal:  J Comput Aided Mol Des       Date:  2002 May-Jun       Impact factor: 3.686

3.  Prediction of P-glycoprotein substrates by a support vector machine approach.

Authors:  Y Xue; C W Yap; L Z Sun; Z W Cao; J F Wang; Y Z Chen
Journal:  J Chem Inf Comput Sci       Date:  2004 Jul-Aug

4.  Identification of descriptors capturing compound class-specific features by mutual information analysis.

Authors:  Anne Mai Wassermann; Britta Nisius; Martin Vogt; Jürgen Bajorath
Journal:  J Chem Inf Model       Date:  2010-10-20       Impact factor: 4.956

5.  A pharmacophore hypothesis for P-glycoprotein substrate recognition using GRIND-based 3D-QSAR.

Authors:  Giovanni Cianchetta; Robert W Singleton; Meng Zhang; Marianne Wildgoose; Dennis Giesing; Arnaldo Fravolini; Gabriele Cruciani; Roy J Vaz
Journal:  J Med Chem       Date:  2005-04-21       Impact factor: 7.446

6.  Computational models for identifying potential P-glycoprotein substrates and inhibitors.

Authors:  Patrizia Crivori; Benedetta Reinach; Daniele Pezzetta; Italo Poggesi
Journal:  Mol Pharm       Date:  2006 Jan-Feb       Impact factor: 4.939

7.  ADME evaluation in drug discovery. 10. Predictions of P-glycoprotein inhibitors using recursive partitioning and naive Bayesian classification techniques.

Authors:  Lei Chen; Youyong Li; Qing Zhao; Hui Peng; Tingjun Hou
Journal:  Mol Pharm       Date:  2011-03-25       Impact factor: 4.939

8.  Cell surface P-glycoprotein associated with multidrug resistance in mammalian cell lines.

Authors:  N Kartner; J R Riordan; V Ling
Journal:  Science       Date:  1983-09-23       Impact factor: 47.728

Review 9.  Targeting multidrug resistance in cancer.

Authors:  Gergely Szakács; Jill K Paterson; Joseph A Ludwig; Catherine Booth-Genthe; Michael M Gottesman
Journal:  Nat Rev Drug Discov       Date:  2006-03       Impact factor: 84.694

10.  Identifying P-glycoprotein substrates using a support vector machine optimized by a particle swarm.

Authors:  Jianping Huang; Guangli Ma; Ishtiaq Muhammad; Yiyu Cheng
Journal:  J Chem Inf Model       Date:  2007-07-03       Impact factor: 4.956

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  4 in total

1.  Influence of feature rankers in the construction of molecular activity prediction models.

Authors:  Gonzalo Cerruela-García; José Pérez-Parra Toledano; Aída de Haro-García; Nicolás García-Pedrajas
Journal:  J Comput Aided Mol Des       Date:  2019-12-31       Impact factor: 3.686

2.  Personalized Body Constitution Inquiry Based on Machine Learning.

Authors:  Baochao Fan; Yanghui Li; Guihua Wen; Yan Ren; Yantong Lu; Ziying Wang; Yuan Zhang; Changjun Wang
Journal:  J Healthc Eng       Date:  2020-11-12       Impact factor: 2.682

Review 3.  Artificial Intelligence in Drug Discovery: A Comprehensive Review of Data-driven and Machine Learning Approaches.

Authors:  Hyunho Kim; Eunyoung Kim; Ingoo Lee; Bongsung Bae; Minsu Park; Hojung Nam
Journal:  Biotechnol Bioprocess Eng       Date:  2021-01-07       Impact factor: 3.386

4.  Graph-Based Feature Selection Approach for Molecular Activity Prediction.

Authors:  Gonzalo Cerruela-García; José Manuel Cuevas-Muñoz; Nicolás García-Pedrajas
Journal:  J Chem Inf Model       Date:  2022-03-22       Impact factor: 4.956

  4 in total

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