Literature DB >> 30364826

Integrative Analysis on Histopathological Image for Identifying Cellular Heterogeneity.

Young Hwan Chang1, Guillaume Thibault1, Brett Johnson1, Adam Margolin1, Joe W Gray1.   

Abstract

This study has brought together image processing, clustering and spatial pattern analysis to quantitatively analyze hematoxylin and eosin-stained (H&E) tissue sections. A mixture of tumor and normal cells (intratumoral heterogeneity) as well as complex tissue architectures of most samples complicate the interpretation of their cytological profiles. To address these challenges, we develop a simple but effective methodology for quantitative analysis for H&E section. We adopt comparative analyses of spatial point patterns to characterize spatial distribution of different nuclei types and complement cellular characteristics analysis. We demonstrate that tumor and normal cell regions exhibit significant differences of lymphocytes spatial distribution or lymphocyte infiltration pattern.

Entities:  

Keywords:  H&E stained image; Heterogeneity; Spatial pattern analysis

Year:  2017        PMID: 30364826      PMCID: PMC6198666          DOI: 10.1117/12.2250428

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  14 in total

1.  Beyond immune density: critical role of spatial heterogeneity in estrogen receptor-negative breast cancer.

Authors:  Sidra Nawaz; Andreas Heindl; Konrad Koelble; Yinyin Yuan
Journal:  Mod Pathol       Date:  2015-02-27       Impact factor: 7.842

2.  Lung image patch classification with automatic feature learning.

Authors:  Qing Li; Weidong Cai; David Dagan Feng
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

Review 3.  Histopathological image analysis: a review.

Authors:  Metin N Gurcan; Laura E Boucheron; Ali Can; Anant Madabhushi; Nasir M Rajpoot; B Yener
Journal:  IEEE Rev Biomed Eng       Date:  2009-10-30

4.  Large Scale Spectral Clustering Via Landmark-Based Sparse Representation.

Authors:  Deng Cai; Xinlei Chen
Journal:  IEEE Trans Cybern       Date:  2014-09-25       Impact factor: 11.448

5.  Classification of Histology Sections via Multispectral Convolutional Sparse Coding.

Authors:  Yin Zhou; Hang Chang; Kenneth Barner; Paul Spellman; Bahram Parvin
Journal:  Conf Comput Vis Pattern Recognit Workshops       Date:  2014-06

6.  Quantitative analysis of histological tissue image based on cytological profiles and spatial statistics.

Authors:  Guillaume Thibault; Vahid Azimi; Brett Johnson; Danielle Jorgens; Jason Link; Adam Margolin; Joe W Gray
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2016-08

7.  Type, density, and location of immune cells within human colorectal tumors predict clinical outcome.

Authors:  Jérôme Galon; Anne Costes; Fatima Sanchez-Cabo; Amos Kirilovsky; Bernhard Mlecnik; Christine Lagorce-Pagès; Marie Tosolini; Matthieu Camus; Anne Berger; Philippe Wind; Franck Zinzindohoué; Patrick Bruneval; Paul-Henri Cugnenc; Zlatko Trajanoski; Wolf-Herman Fridman; Franck Pagès
Journal:  Science       Date:  2006-09-29       Impact factor: 47.728

8.  Quantitative image analysis of cellular heterogeneity in breast tumors complements genomic profiling.

Authors:  Yinyin Yuan; Henrik Failmezger; Oscar M Rueda; H Raza Ali; Stefan Gräf; Suet-Feung Chin; Roland F Schwarz; Christina Curtis; Mark J Dunning; Helen Bardwell; Nicola Johnson; Sarah Doyle; Gulisa Turashvili; Elena Provenzano; Sam Aparicio; Carlos Caldas; Florian Markowetz
Journal:  Sci Transl Med       Date:  2012-10-24       Impact factor: 17.956

9.  Robust automated tumour segmentation on histological and immunohistochemical tissue images.

Authors:  Ching-Wei Wang; Dean Fennell; Ian Paul; Kienan Savage; Peter Hamilton
Journal:  PLoS One       Date:  2011-02-28       Impact factor: 3.240

10.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Authors:  Anne E Carpenter; Thouis R Jones; Michael R Lamprecht; Colin Clarke; In Han Kang; Ola Friman; David A Guertin; Joo Han Chang; Robert A Lindquist; Jason Moffat; Polina Golland; David M Sabatini
Journal:  Genome Biol       Date:  2006-10-31       Impact factor: 13.583

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