Literature DB >> 28324942

Quantitative analysis of histological tissue image based on cytological profiles and spatial statistics.

Guillaume Thibault, Vahid Azimi, Brett Johnson, Danielle Jorgens, Jason Link, Adam Margolin, Joe W Gray.   

Abstract

The cellular heterogeneity and complex tissue architecture of most tumor samples is a major obstacle in image analysis on standard hematoxylin and eosin-stained (H&E) tissue sections. A mixture of cancer and normal cells complicates the interpretation of their cytological profiles. Furthermore, spatial arrangement and architectural organization of cells are generally not reflected in cellular characteristics analysis. To address these challenges, first we describe an automatic nuclei segmentation of H&E tissue sections. In the task of deconvoluting cellular heterogeneity, we adopt Landmark based Spectral Clustering (LSC) to group individual nuclei in such a way that nuclei in the same group are more similar. We next devise spatial statistics for analyzing spatial arrangement and organization, which are not detectable by individual cellular characteristics. Our quantitative, spatial statistics analysis could benefit H&E section analysis by refining and complementing cellular characteristics analysis.

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Year:  2016        PMID: 28324942     DOI: 10.1109/EMBC.2016.7590914

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  4 in total

1.  Robust Cell Detection and Segmentation for Image Cytometry Reveal Th17 Cell Heterogeneity.

Authors:  Takahiro Tsujikawa; Guillaume Thibault; Vahid Azimi; Sam Sivagnanam; Grace Banik; Casey Means; Rie Kawashima; Daniel R Clayburgh; Joe W Gray; Lisa M Coussens; Young Hwan Chang
Journal:  Cytometry A       Date:  2019-02-04       Impact factor: 4.355

2.  Integrative Analysis on Histopathological Image for Identifying Cellular Heterogeneity.

Authors:  Young Hwan Chang; Guillaume Thibault; Brett Johnson; Adam Margolin; Joe W Gray
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-03-01

3.  BREAST CANCER HISTOPATHOLOGY IMAGE ANALYSIS PIPELINE FOR TUMOR PURITY ESTIMATION.

Authors:  Vahid Azimi; Young Hwan Chang; Guillaume Thibault; Jaclyn Smith; Takahiro Tsujikawa; Benjamin Kukull; Bradden Jensen; Christopher Corless; Adam Margolin; Joe W Gray
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2017-06-19

4.  Computational measurement of tumor immune microenvironment in gastric adenocarcinomas.

Authors:  Young Hwan Chang; You Jeong Heo; Junhun Cho; Sang Yong Song; Jeeyun Lee; Kyoung-Mee Kim
Journal:  Sci Rep       Date:  2018-09-17       Impact factor: 4.379

  4 in total

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